Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 TOP3BP1-201ENST00000420768 1380 ntBASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 YBX2P1-201ENST00000394192 760 ntBASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 CRYGEP-201ENST00000412192 528 ntBASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CUEDC1Q9NWM3 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 HTR5BP-201ENST00000430851 1154 ntBASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 HCG4B-203ENST00000450128 991 ntBASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 KRT18P3-201ENST00000451602 1288 ntBASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 AC112482.1-201ENST00000492080 688 ntBASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 AC078925.2-201ENST00000624013 1973 ntBASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 PKD1P5-201ENST00000532415 10291 ntBASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.29■□□□□ 0.2
CUEDC1Q9NWM3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 AL645728.1-201ENST00000366221 2101 ntBASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
CUEDC1Q9NWM3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms