Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.73■□□□□ 0.11
ZNF540Q8NDQ6 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 AC092850.2-201ENST00000623821 2697 ntBASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 HBZP1-201ENST00000354915 429 ntBASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 AL645929.1-201ENST00000420084 975 ntBASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 SPDYE15P-201ENST00000424157 909 ntBASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 AC024243.1-201ENST00000609234 778 ntBASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 AC005052.1-201ENST00000625181 2492 ntBASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF540Q8NDQ6 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 AL691432.3-201ENST00000621860 400 ntBASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF540Q8NDQ6 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms