RNA–Protein interactions for RNA: ENST00000612369.4

VCX3A-203, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 812 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-203ENST00000612369 NISCHQ9Y2I1 1504 aa44.89■■■■■ 4.78
VCX3A-203ENST00000612369 CCDC180Q9P1Z9 1646 aa40.1■■■■■ 4.01
VCX3A-203ENST00000612369 ABCC9O60706 1549 aa39.58■■■■□ 3.93
VCX3A-203ENST00000612369 RB1CC1Q8TDY2 1594 aa37.96■■■■□ 3.67
VCX3A-203ENST00000612369 NACADO15069 1562 aa37.83■■■■□ 3.65
VCX3A-203ENST00000612369 DCAF8L2P0C7V8 631 aa37.65■■■■□ 3.62
VCX3A-203ENST00000612369 MYO15BQ96JP2 1530 aa37.5■■■■□ 3.59
VCX3A-203ENST00000612369 ZCCHC6Q5VYS8 1495 aaKnown RBP37.29■■■■□ 3.56
VCX3A-203ENST00000612369 DCAF1Q9Y4B6 1507 aa37.17■■■■□ 3.54
VCX3A-203ENST00000612369 UNC13AQ9UPW8 1703 aa37.02■■■■□ 3.52
VCX3A-203ENST00000612369 PABPN1Q86U42 306 aaKnown RBP eCLIP36.91■■■■□ 3.5
VCX3A-203ENST00000612369 BICRAQ9NZM4 1560 aa36.78■■■■□ 3.48
VCX3A-203ENST00000612369 DNAJC5BQ9UF47 199 aa36.71■■■■□ 3.47
VCX3A-203ENST00000612369 SCRIBQ14160 1630 aa36.48■■■■□ 3.43
VCX3A-203ENST00000612369 SHROOM4Q9ULL8 1493 aa36.46■■■■□ 3.43
VCX3A-203ENST00000612369 EIF4G1Q04637 1599 aaKnown RBP35.86■■■■□ 3.33
VCX3A-203ENST00000612369 CC2D2AQ9P2K1 1620 aa35.8■■■■□ 3.32
VCX3A-203ENST00000612369 CECR2Q9BXF3 1484 aa35.65■■■■□ 3.3
VCX3A-203ENST00000612369 NCAPD3P42695 1498 aa34.91■■■■□ 3.18
VCX3A-203ENST00000612369 SMARCA4P51532 1647 aa34.9■■■■□ 3.18
VCX3A-203ENST00000612369 ATAD2BQ9ULI0 1458 aa34.84■■■■□ 3.17
VCX3A-203ENST00000612369 BAZ1AQ9NRL2 1556 aaPredicted RBP34.83■■■■□ 3.17
VCX3A-203ENST00000612369 SMARCA2P51531 1590 aa34.8■■■■□ 3.16
VCX3A-203ENST00000612369 HMGXB3Q12766 1538 aa34.69■■■■□ 3.14
VCX3A-203ENST00000612369 PEG3Q9GZU2 1588 aa34.61■■■■□ 3.13
VCX3A-203ENST00000612369 MROH2BQ7Z745 1585 aa34.55■■■■□ 3.12
VCX3A-203ENST00000612369 BAZ1BQ9UIG0 1483 aaKnown RBP34.52■■■■□ 3.12
VCX3A-203ENST00000612369 ERCC6Q03468 1493 aa34.18■■■■□ 3.06
VCX3A-203ENST00000612369 WIZO95785 1651 aa34.15■■■■□ 3.06
VCX3A-203ENST00000612369 NESP48681 1621 aa34.12■■■■□ 3.05
VCX3A-203ENST00000612369 LAMC3Q9Y6N6 1575 aa34.05■■■■□ 3.04
VCX3A-203ENST00000612369 RSF1Q96T23 1441 aaPredicted RBP34.03■■■■□ 3.04
VCX3A-203ENST00000612369 CUX2O14529 1486 aa34.01■■■■□ 3.04
VCX3A-203ENST00000612369 CADPSQ9ULU8 1353 aa33.86■■■■□ 3.01
VCX3A-203ENST00000612369 PDS5BQ9NTI5 1447 aa33.85■■■■□ 3.01
VCX3A-203ENST00000612369 TOP2AP11388 1531 aaKnown RBP33.79■■■■□ 3
VCX3A-203ENST00000612369 THOC2Q8NI27 1593 aaKnown RBP33.71■■■□□ 2.99
VCX3A-203ENST00000612369 KIF21AQ7Z4S6 1674 aa33.71■■■□□ 2.99
VCX3A-203ENST00000612369 CFTRP13569 1480 aa33.57■■■□□ 2.97
VCX3A-203ENST00000612369 MRC2Q9UBG0 1479 aa33.49■■■□□ 2.95
VCX3A-203ENST00000612369 DNAJC5Q9H3Z4 198 aa33.46■■■□□ 2.95
VCX3A-203ENST00000612369 FANCD2Q9BXW9 1451 aa33.45■■■□□ 2.95
VCX3A-203ENST00000612369 CEP164Q9UPV0 1460 aa33.45■■■□□ 2.95
VCX3A-203ENST00000612369 WDR62O43379 1518 aa33.39■■■□□ 2.94
VCX3A-203ENST00000612369 CCDC88BA6NC98 1476 aa33.39■■■□□ 2.94
VCX3A-203ENST00000612369 PRDM2Q13029 1718 aa33.25■■■□□ 2.91
VCX3A-203ENST00000612369 URB2Q14146 1524 aaKnown RBP33.12■■■□□ 2.89
VCX3A-203ENST00000612369 ABCC8Q09428 1581 aa32.92■■■□□ 2.86
VCX3A-203ENST00000612369 TOPBP1Q92547 1522 aa32.86■■■□□ 2.85
VCX3A-203ENST00000612369 SUPT5HO00267 1087 aaKnown RBP32.83■■■□□ 2.85
VCX3A-203ENST00000612369 DNMBPQ6XZF7 1577 aa32.79■■■□□ 2.84
VCX3A-203ENST00000612369 IFT140Q96RY7 1462 aa32.79■■■□□ 2.84
VCX3A-203ENST00000612369 ZNF608Q9ULD9 1512 aaPredicted RBP32.61■■■□□ 2.81
VCX3A-203ENST00000612369 POLA1P09884 1462 aaPredicted RBP32.55■■■□□ 2.8
VCX3A-203ENST00000612369 OSCARQ8IYS5 282 aa32.54■■■□□ 2.8
VCX3A-203ENST00000612369 TARBP1Q13395 1621 aaKnown RBP32.53■■■□□ 2.8
VCX3A-203ENST00000612369 EIF4G3O43432 1585 aaKnown RBP32.47■■■□□ 2.79
VCX3A-203ENST00000612369 SOGA1O94964 1423 aa32.43■■■□□ 2.78
VCX3A-203ENST00000612369 CUX1P39880 1505 aa32.43■■■□□ 2.78
VCX3A-203ENST00000612369 FGD5Q6ZNL6 1462 aa32.41■■■□□ 2.78
VCX3A-203ENST00000612369 AQRO60306 1485 aaKnown RBP eCLIP32.4■■■□□ 2.78
VCX3A-203ENST00000612369 RAD54L2Q9Y4B4 1467 aa32.39■■■□□ 2.78
VCX3A-203ENST00000612369 WDR97A6NE52 1622 aa32.32■■■□□ 2.76
VCX3A-203ENST00000612369 TDRD9Q8NDG6 1382 aaKnown RBP32.28■■■□□ 2.76
VCX3A-203ENST00000612369 CHD1O14646 1710 aa32.13■■■□□ 2.73
VCX3A-203ENST00000612369 GRIN2BQ13224 1484 aa32.11■■■□□ 2.73
VCX3A-203ENST00000612369 WRNQ14191 1432 aaPredicted RBP eCLIP32.11■■■□□ 2.73
VCX3A-203ENST00000612369 TRIM41Q8WV44 630 aa32.11■■■□□ 2.73
VCX3A-203ENST00000612369 ABCA10Q8WWZ4 1543 aa32.1■■■□□ 2.73
VCX3A-203ENST00000612369 FBLN2P98095 1184 aa32.1■■■□□ 2.73
VCX3A-203ENST00000612369 TOP2BQ02880 1626 aa32.08■■■□□ 2.73
VCX3A-203ENST00000612369 SNAPC4Q5SXM2 1469 aa32.08■■■□□ 2.73
VCX3A-203ENST00000612369 MAGI1Q96QZ7 1491 aaPredicted RBP32.07■■■□□ 2.72
VCX3A-203ENST00000612369 BIVM-ERCC5R4GMW8 1640 aa32.07■■■□□ 2.72
VCX3A-203ENST00000612369 GAPVD1Q14C86 1478 aa32.05■■■□□ 2.72
VCX3A-203ENST00000612369 SYNJ1O43426 1573 aa32■■■□□ 2.71
VCX3A-203ENST00000612369 CHMP7Q8WUX9 453 aaPredicted RBP31.99■■■□□ 2.71
VCX3A-203ENST00000612369 RIMBP3CA6NJZ7 1639 aa31.99■■■□□ 2.71
VCX3A-203ENST00000612369 RIMBP3BA6NNM3 1639 aa31.99■■■□□ 2.71
VCX3A-203ENST00000612369 RIMBP3Q9UFD9 1639 aa31.99■■■□□ 2.71
VCX3A-203ENST00000612369 ABCA5Q8WWZ7 1642 aa31.98■■■□□ 2.71
VCX3A-203ENST00000612369 ARHGEF11O15085 1522 aa31.96■■■□□ 2.71
VCX3A-203ENST00000612369 PBRM1Q86U86 1689 aa31.96■■■□□ 2.71
VCX3A-203ENST00000612369 SYNJ2O15056 1496 aa31.96■■■□□ 2.71
VCX3A-203ENST00000612369 CLASP1Q7Z460 1538 aa31.81■■■□□ 2.68
VCX3A-203ENST00000612369 ERICH3Q5RHP9 1530 aa31.72■■■□□ 2.67
VCX3A-203ENST00000612369 ADAMTS12P58397 1594 aa31.7■■■□□ 2.67
VCX3A-203ENST00000612369 CYB5RLQ6IPT4 315 aa31.7■■■□□ 2.67
VCX3A-203ENST00000612369 GRIN2AQ12879 1464 aa31.68■■■□□ 2.66
VCX3A-203ENST00000612369 FHAD1B1AJZ9 1412 aa31.67■■■□□ 2.66
VCX3A-203ENST00000612369 ARAP1Q96P48 1450 aa31.66■■■□□ 2.66
VCX3A-203ENST00000612369 NUP160Q12769 1436 aa31.57■■■□□ 2.64
VCX3A-203ENST00000612369 CEP170Q5SW79 1584 aa31.51■■■□□ 2.63
VCX3A-203ENST00000612369 KIF27Q86VH2 1401 aa31.49■■■□□ 2.63
VCX3A-203ENST00000612369 IGF1RP08069 1367 aa31.41■■■□□ 2.62
VCX3A-203ENST00000612369 SHROOM2Q13796 1616 aa31.37■■■□□ 2.61
VCX3A-203ENST00000612369 CUL7Q14999 1698 aa31.34■■■□□ 2.61
VCX3A-203ENST00000612369 ERCC6L2Q5T890 1561 aa31.28■■■□□ 2.6
VCX3A-203ENST00000612369 JPH4Q96JJ6 628 aa31.26■■■□□ 2.59
VCX3A-203ENST00000612369 RUSC2Q8N2Y8 1516 aa31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms