Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 YBX1P4-201ENST00000392794 808 ntBASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLCF1Q9UBD9 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.45■■□□□ 1.02
CLCF1Q9UBD9 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CLCF1Q9UBD9 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCF1Q9UBD9 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCF1Q9UBD9 LONRF2P2-201ENST00000439212 571 ntBASIC21.45■■□□□ 1.02
CLCF1Q9UBD9 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCF1Q9UBD9 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLCF1Q9UBD9 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCF1Q9UBD9 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLCF1Q9UBD9 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCF1Q9UBD9 AL451085.2-201ENST00000605085 799 ntBASIC21.44■■□□□ 1.02
CLCF1Q9UBD9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.44■■□□□ 1.02
CLCF1Q9UBD9 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCF1Q9UBD9 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLCF1Q9UBD9 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.44■■□□□ 1.02
CLCF1Q9UBD9 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CLCF1Q9UBD9 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCF1Q9UBD9 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CLCF1Q9UBD9 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLCF1Q9UBD9 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.42■■□□□ 1.02
CLCF1Q9UBD9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.42■■□□□ 1.02
CLCF1Q9UBD9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CLCF1Q9UBD9 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.42■■□□□ 1.02
CLCF1Q9UBD9 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.42■■□□□ 1.02
CLCF1Q9UBD9 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.42■■□□□ 1.02
CLCF1Q9UBD9 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLCF1Q9UBD9 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLCF1Q9UBD9 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CLCF1Q9UBD9 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CLCF1Q9UBD9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.4■■□□□ 1.02
CLCF1Q9UBD9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CLCF1Q9UBD9 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
CLCF1Q9UBD9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLCF1Q9UBD9 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.39■■□□□ 1.01
CLCF1Q9UBD9 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CLCF1Q9UBD9 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLCF1Q9UBD9 AL035685.1-201ENST00000636663 812 ntBASIC21.39■■□□□ 1.01
CLCF1Q9UBD9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CLCF1Q9UBD9 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CLCF1Q9UBD9 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCF1Q9UBD9 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CLCF1Q9UBD9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCF1Q9UBD9 AC103724.3-201ENST00000564481 992 ntBASIC21.38■■□□□ 1.01
CLCF1Q9UBD9 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CLCF1Q9UBD9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CLCF1Q9UBD9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.37■■□□□ 1.01
CLCF1Q9UBD9 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
CLCF1Q9UBD9 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CLCF1Q9UBD9 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLCF1Q9UBD9 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLCF1Q9UBD9 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLCF1Q9UBD9 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.36■■□□□ 1.01
CLCF1Q9UBD9 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CLCF1Q9UBD9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CLCF1Q9UBD9 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.36■■□□□ 1.01
CLCF1Q9UBD9 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CLCF1Q9UBD9 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.36■■□□□ 1.01
CLCF1Q9UBD9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLCF1Q9UBD9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.36■■□□□ 1.01
CLCF1Q9UBD9 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CLCF1Q9UBD9 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CLCF1Q9UBD9 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CLCF1Q9UBD9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CLCF1Q9UBD9 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCF1Q9UBD9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
CLCF1Q9UBD9 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
CLCF1Q9UBD9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.34■■□□□ 1.01
CLCF1Q9UBD9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.34■■□□□ 1.01
CLCF1Q9UBD9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CLCF1Q9UBD9 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CLCF1Q9UBD9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CLCF1Q9UBD9 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
CLCF1Q9UBD9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CLCF1Q9UBD9 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLCF1Q9UBD9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
CLCF1Q9UBD9 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.33■■□□□ 1.01
CLCF1Q9UBD9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.33■■□□□ 1.01
CLCF1Q9UBD9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLCF1Q9UBD9 AC009299.2-201ENST00000482477 511 ntBASIC21.33■■□□□ 1.01
CLCF1Q9UBD9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms