Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RNF39Q9H2S5 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.29■■□□□ 1.8
RNF39Q9H2S5 AC087393.1-201ENST00000582896 145 ntBASIC26.29■■□□□ 1.8
RNF39Q9H2S5 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
RNF39Q9H2S5 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.28■■□□□ 1.8
RNF39Q9H2S5 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
RNF39Q9H2S5 RPS2P7-201ENST00000447334 885 ntBASIC26.28■■□□□ 1.8
RNF39Q9H2S5 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RNF39Q9H2S5 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC26.28■■□□□ 1.8
RNF39Q9H2S5 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RNF39Q9H2S5 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RNF39Q9H2S5 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RNF39Q9H2S5 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RNF39Q9H2S5 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
RNF39Q9H2S5 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RNF39Q9H2S5 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
RNF39Q9H2S5 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RNF39Q9H2S5 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.26■■□□□ 1.79
RNF39Q9H2S5 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
RNF39Q9H2S5 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.25■■□□□ 1.79
RNF39Q9H2S5 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RNF39Q9H2S5 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RNF39Q9H2S5 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RNF39Q9H2S5 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 LST1-206ENST00000376090 689 ntTSL 2 BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 LST1-209ENST00000376096 565 ntTSL 2 BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 LST1-210ENST00000376099 610 ntTSL 2 BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 LST1-214ENST00000418507 726 ntTSL 2 BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 AC137695.1-201ENST00000604126 489 ntBASIC26.24■■□□□ 1.79
RNF39Q9H2S5 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF39Q9H2S5 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RNF39Q9H2S5 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
RNF39Q9H2S5 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RNF39Q9H2S5 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
RNF39Q9H2S5 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.23■■□□□ 1.79
RNF39Q9H2S5 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.23■■□□□ 1.79
RNF39Q9H2S5 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.23■■□□□ 1.79
RNF39Q9H2S5 AL035685.1-201ENST00000636663 812 ntBASIC26.23■■□□□ 1.79
RNF39Q9H2S5 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.23■■□□□ 1.79
RNF39Q9H2S5 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.22■■□□□ 1.79
RNF39Q9H2S5 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
RNF39Q9H2S5 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RNF39Q9H2S5 YBX1P4-201ENST00000392794 808 ntBASIC26.22■■□□□ 1.79
RNF39Q9H2S5 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC26.22■■□□□ 1.79
RNF39Q9H2S5 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RNF39Q9H2S5 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC26.22■■□□□ 1.79
RNF39Q9H2S5 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.22■■□□□ 1.79
RNF39Q9H2S5 MIR4508-201ENST00000584178 70 ntBASIC26.22■■□□□ 1.79
RNF39Q9H2S5 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RNF39Q9H2S5 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RNF39Q9H2S5 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RNF39Q9H2S5 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RNF39Q9H2S5 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
RNF39Q9H2S5 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RNF39Q9H2S5 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RNF39Q9H2S5 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.2■■□□□ 1.79
RNF39Q9H2S5 LONRF2P2-201ENST00000439212 571 ntBASIC26.2■■□□□ 1.78
RNF39Q9H2S5 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
RNF39Q9H2S5 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RNF39Q9H2S5 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.19■■□□□ 1.78
RNF39Q9H2S5 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RNF39Q9H2S5 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
RNF39Q9H2S5 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RNF39Q9H2S5 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RNF39Q9H2S5 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RNF39Q9H2S5 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
RNF39Q9H2S5 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RNF39Q9H2S5 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RNF39Q9H2S5 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RNF39Q9H2S5 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
RNF39Q9H2S5 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RNF39Q9H2S5 AC019171.1-201ENST00000601251 1056 ntBASIC26.17■■□□□ 1.78
RNF39Q9H2S5 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.17■■□□□ 1.78
RNF39Q9H2S5 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.17■■□□□ 1.78
RNF39Q9H2S5 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
RNF39Q9H2S5 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
RNF39Q9H2S5 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
RNF39Q9H2S5 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RNF39Q9H2S5 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RNF39Q9H2S5 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RNF39Q9H2S5 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RNF39Q9H2S5 KATNBL1P2-201ENST00000433311 835 ntBASIC26.16■■□□□ 1.78
RNF39Q9H2S5 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.16■■□□□ 1.78
RNF39Q9H2S5 AC103724.3-201ENST00000564481 992 ntBASIC26.16■■□□□ 1.78
RNF39Q9H2S5 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
RNF39Q9H2S5 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.15■■□□□ 1.78
RNF39Q9H2S5 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
RNF39Q9H2S5 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RNF39Q9H2S5 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RNF39Q9H2S5 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.15■■□□□ 1.78
RNF39Q9H2S5 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RNF39Q9H2S5 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RNF39Q9H2S5 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms