Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RNFT1Q5M7Z0 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RNFT1Q5M7Z0 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RNFT1Q5M7Z0 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RNFT1Q5M7Z0 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RNFT1Q5M7Z0 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
RNFT1Q5M7Z0 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.82■■□□□ 1.08
RNFT1Q5M7Z0 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.82■■□□□ 1.08
RNFT1Q5M7Z0 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RNFT1Q5M7Z0 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RNFT1Q5M7Z0 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RNFT1Q5M7Z0 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNFT1Q5M7Z0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNFT1Q5M7Z0 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNFT1Q5M7Z0 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RNFT1Q5M7Z0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
RNFT1Q5M7Z0 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNFT1Q5M7Z0 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
RNFT1Q5M7Z0 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RNFT1Q5M7Z0 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNFT1Q5M7Z0 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNFT1Q5M7Z0 KRT18P10-201ENST00000388836 1287 ntBASIC21.79■■□□□ 1.08
RNFT1Q5M7Z0 GUSBP5-201ENST00000418136 578 ntBASIC21.79■■□□□ 1.08
RNFT1Q5M7Z0 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNFT1Q5M7Z0 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.79■■□□□ 1.08
RNFT1Q5M7Z0 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.78■■□□□ 1.08
RNFT1Q5M7Z0 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RNFT1Q5M7Z0 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNFT1Q5M7Z0 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNFT1Q5M7Z0 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNFT1Q5M7Z0 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RNFT1Q5M7Z0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNFT1Q5M7Z0 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
RNFT1Q5M7Z0 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNFT1Q5M7Z0 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RNFT1Q5M7Z0 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.77■■□□□ 1.08
RNFT1Q5M7Z0 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.77■■□□□ 1.08
RNFT1Q5M7Z0 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNFT1Q5M7Z0 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.76■■□□□ 1.07
RNFT1Q5M7Z0 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNFT1Q5M7Z0 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNFT1Q5M7Z0 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.76■■□□□ 1.07
RNFT1Q5M7Z0 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.76■■□□□ 1.07
RNFT1Q5M7Z0 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.75■■□□□ 1.07
RNFT1Q5M7Z0 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
RNFT1Q5M7Z0 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNFT1Q5M7Z0 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNFT1Q5M7Z0 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.74■■□□□ 1.07
RNFT1Q5M7Z0 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNFT1Q5M7Z0 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNFT1Q5M7Z0 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNFT1Q5M7Z0 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
RNFT1Q5M7Z0 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
RNFT1Q5M7Z0 AC239859.2-201ENST00000444165 318 ntBASIC21.73■■□□□ 1.07
RNFT1Q5M7Z0 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNFT1Q5M7Z0 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNFT1Q5M7Z0 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.72■■□□□ 1.07
RNFT1Q5M7Z0 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.72■■□□□ 1.07
RNFT1Q5M7Z0 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RNFT1Q5M7Z0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.72■■□□□ 1.07
RNFT1Q5M7Z0 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.72■■□□□ 1.07
RNFT1Q5M7Z0 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
RNFT1Q5M7Z0 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNFT1Q5M7Z0 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RNFT1Q5M7Z0 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.71■■□□□ 1.07
RNFT1Q5M7Z0 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 AC022616.5-201ENST00000518796 181 ntBASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RNFT1Q5M7Z0 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms