Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC27.01■■□□□ 1.91
NKX3-2P78367 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
NKX3-2P78367 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
NKX3-2P78367 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC27■■□□□ 1.91
NKX3-2P78367 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC27■■□□□ 1.91
NKX3-2P78367 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC27■■□□□ 1.91
NKX3-2P78367 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC27■■□□□ 1.91
NKX3-2P78367 AC021242.3-201ENST00000607598 1377 ntBASIC26.99■■□□□ 1.91
NKX3-2P78367 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NKX3-2P78367 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NKX3-2P78367 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.99■■□□□ 1.91
NKX3-2P78367 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.99■■□□□ 1.91
NKX3-2P78367 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NKX3-2P78367 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
NKX3-2P78367 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.99■■□□□ 1.91
NKX3-2P78367 LINC01003-201ENST00000564834 1764 ntBASIC26.99■■□□□ 1.91
NKX3-2P78367 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
NKX3-2P78367 AC008406.3-201ENST00000620001 1374 ntBASIC26.98■■□□□ 1.91
NKX3-2P78367 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.98■■□□□ 1.91
NKX3-2P78367 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.98■■□□□ 1.91
NKX3-2P78367 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.98■■□□□ 1.91
NKX3-2P78367 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
NKX3-2P78367 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
NKX3-2P78367 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
NKX3-2P78367 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
NKX3-2P78367 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
NKX3-2P78367 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
NKX3-2P78367 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.96■■□□□ 1.91
NKX3-2P78367 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.96■■□□□ 1.91
NKX3-2P78367 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
NKX3-2P78367 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.9
NKX3-2P78367 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
NKX3-2P78367 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
NKX3-2P78367 AC120024.1-201ENST00000562672 995 ntBASIC26.95■■□□□ 1.9
NKX3-2P78367 BX255925.1-201ENST00000566954 1854 ntBASIC26.95■■□□□ 1.9
NKX3-2P78367 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.95■■□□□ 1.9
NKX3-2P78367 PEMT-206ENST00000435340 960 ntTSL 5 BASIC26.94■■□□□ 1.9
NKX3-2P78367 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
NKX3-2P78367 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
NKX3-2P78367 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
NKX3-2P78367 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
NKX3-2P78367 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
NKX3-2P78367 AC142472.1-201ENST00000612013 1741 ntBASIC26.92■■□□□ 1.9
NKX3-2P78367 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
NKX3-2P78367 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
NKX3-2P78367 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
NKX3-2P78367 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
NKX3-2P78367 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26.91■■□□□ 1.9
NKX3-2P78367 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.91■■□□□ 1.9
NKX3-2P78367 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NKX3-2P78367 KRT16P3-201ENST00000439127 1283 ntBASIC26.91■■□□□ 1.9
NKX3-2P78367 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.91■■□□□ 1.9
NKX3-2P78367 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.91■■□□□ 1.9
NKX3-2P78367 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26.9■■□□□ 1.9
NKX3-2P78367 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
NKX3-2P78367 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
NKX3-2P78367 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.9■■□□□ 1.9
NKX3-2P78367 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NKX3-2P78367 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
NKX3-2P78367 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.89■■□□□ 1.9
NKX3-2P78367 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
NKX3-2P78367 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
NKX3-2P78367 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.89■■□□□ 1.89
NKX3-2P78367 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.89■■□□□ 1.89
NKX3-2P78367 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
NKX3-2P78367 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.88■■□□□ 1.89
NKX3-2P78367 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
NKX3-2P78367 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
NKX3-2P78367 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
NKX3-2P78367 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
NKX3-2P78367 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC26.87■■□□□ 1.89
NKX3-2P78367 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
NKX3-2P78367 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.87■■□□□ 1.89
NKX3-2P78367 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
NKX3-2P78367 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.86■■□□□ 1.89
NKX3-2P78367 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC26.86■■□□□ 1.89
NKX3-2P78367 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.86■■□□□ 1.89
NKX3-2P78367 AC092028.1-203ENST00000608262 953 ntBASIC26.86■■□□□ 1.89
NKX3-2P78367 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
NKX3-2P78367 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
NKX3-2P78367 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
NKX3-2P78367 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.85■■□□□ 1.89
NKX3-2P78367 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.85■■□□□ 1.89
NKX3-2P78367 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.85■■□□□ 1.89
NKX3-2P78367 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
NKX3-2P78367 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
NKX3-2P78367 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NKX3-2P78367 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.84■■□□□ 1.89
NKX3-2P78367 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.84■■□□□ 1.89
NKX3-2P78367 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
NKX3-2P78367 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.83■■□□□ 1.89
NKX3-2P78367 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
NKX3-2P78367 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
NKX3-2P78367 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.83■■□□□ 1.89
NKX3-2P78367 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.83■■□□□ 1.89
NKX3-2P78367 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.83■■□□□ 1.89
NKX3-2P78367 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
NKX3-2P78367 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC26.82■■□□□ 1.88
NKX3-2P78367 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC26.82■■□□□ 1.88
NKX3-2P78367 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms