Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA3P55318 AC068473.5-201ENST00000616428 2072 ntBASIC17.91■□□□□ 0.46
FOXA3P55318 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA3P55318 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA3P55318 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA3P55318 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA3P55318 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA3P55318 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC17.9■□□□□ 0.46
FOXA3P55318 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC17.9■□□□□ 0.46
FOXA3P55318 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.9■□□□□ 0.46
FOXA3P55318 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA3P55318 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA3P55318 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA3P55318 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA3P55318 LINC00543-201ENST00000567234 1845 ntBASIC17.89■□□□□ 0.45
FOXA3P55318 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA3P55318 MIR762-201ENST00000390236 83 ntBASIC17.89■□□□□ 0.45
FOXA3P55318 PEX7-203ENST00000541292 945 ntTSL 5 BASIC17.89■□□□□ 0.45
FOXA3P55318 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
FOXA3P55318 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.89■□□□□ 0.45
FOXA3P55318 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA3P55318 AP003733.4-201ENST00000623785 1697 ntBASIC17.89■□□□□ 0.45
FOXA3P55318 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
FOXA3P55318 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA3P55318 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA3P55318 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA3P55318 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA3P55318 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA3P55318 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA3P55318 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA3P55318 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA3P55318 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC17.87■□□□□ 0.45
FOXA3P55318 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC17.87■□□□□ 0.45
FOXA3P55318 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC17.87■□□□□ 0.45
FOXA3P55318 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
FOXA3P55318 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC17.87■□□□□ 0.45
FOXA3P55318 AC096887.2-201ENST00000623443 1957 ntBASIC17.87■□□□□ 0.45
FOXA3P55318 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
FOXA3P55318 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC17.87■□□□□ 0.45
FOXA3P55318 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC17.87■□□□□ 0.45
FOXA3P55318 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA3P55318 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA3P55318 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA3P55318 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
FOXA3P55318 AC097639.1-201ENST00000565519 1891 ntBASIC17.86■□□□□ 0.45
FOXA3P55318 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA3P55318 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA3P55318 LINC01124-201ENST00000409786 2117 ntBASIC17.86■□□□□ 0.45
FOXA3P55318 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
FOXA3P55318 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA3P55318 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA3P55318 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA3P55318 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA3P55318 CHML-205ENST00000638160 705 ntTSL 3 BASIC17.86■□□□□ 0.45
FOXA3P55318 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA3P55318 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA3P55318 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC17.86■□□□□ 0.45
FOXA3P55318 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA3P55318 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
FOXA3P55318 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA3P55318 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
FOXA3P55318 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC17.85■□□□□ 0.45
FOXA3P55318 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC17.85■□□□□ 0.45
FOXA3P55318 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
FOXA3P55318 AC079834.2-201ENST00000609776 1949 ntBASIC17.85■□□□□ 0.45
FOXA3P55318 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
FOXA3P55318 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA3P55318 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA3P55318 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA3P55318 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA3P55318 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA3P55318 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA3P55318 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC17.84■□□□□ 0.45
FOXA3P55318 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
FOXA3P55318 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA3P55318 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.84■□□□□ 0.45
FOXA3P55318 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC17.84■□□□□ 0.45
FOXA3P55318 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.83■□□□□ 0.45
FOXA3P55318 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
FOXA3P55318 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
FOXA3P55318 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC17.83■□□□□ 0.45
FOXA3P55318 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC17.83■□□□□ 0.44
FOXA3P55318 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
FOXA3P55318 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA3P55318 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC17.83■□□□□ 0.44
FOXA3P55318 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC17.83■□□□□ 0.44
FOXA3P55318 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA3P55318 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA3P55318 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA3P55318 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
FOXA3P55318 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA3P55318 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC17.82■□□□□ 0.44
FOXA3P55318 AC136428.2-201ENST00000563187 214 ntBASIC17.82■□□□□ 0.44
FOXA3P55318 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA3P55318 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA3P55318 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA3P55318 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC17.82■□□□□ 0.44
FOXA3P55318 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA3P55318 AC110285.7-201ENST00000624417 1536 ntBASIC17.82■□□□□ 0.44
FOXA3P55318 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms