Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
PDLIM4P50479 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM4P50479 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM4P50479 AC103724.3-201ENST00000564481 992 ntBASIC20.37■□□□□ 0.85
PDLIM4P50479 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PDLIM4P50479 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.37■□□□□ 0.85
PDLIM4P50479 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM4P50479 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
PDLIM4P50479 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM4P50479 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDLIM4P50479 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.36■□□□□ 0.85
PDLIM4P50479 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDLIM4P50479 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDLIM4P50479 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.36■□□□□ 0.85
PDLIM4P50479 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
PDLIM4P50479 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PDLIM4P50479 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PDLIM4P50479 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PDLIM4P50479 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM4P50479 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
PDLIM4P50479 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM4P50479 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.34■□□□□ 0.85
PDLIM4P50479 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PDLIM4P50479 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM4P50479 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM4P50479 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
PDLIM4P50479 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.34■□□□□ 0.85
PDLIM4P50479 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PDLIM4P50479 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
PDLIM4P50479 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDLIM4P50479 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDLIM4P50479 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.33■□□□□ 0.85
PDLIM4P50479 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PDLIM4P50479 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDLIM4P50479 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.32■□□□□ 0.84
PDLIM4P50479 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM4P50479 AL121749.1-202ENST00000609313 2153 ntBASIC20.32■□□□□ 0.84
PDLIM4P50479 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM4P50479 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM4P50479 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM4P50479 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM4P50479 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM4P50479 LONRF2P2-201ENST00000439212 571 ntBASIC20.32■□□□□ 0.84
PDLIM4P50479 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM4P50479 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM4P50479 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM4P50479 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.31■□□□□ 0.84
PDLIM4P50479 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PDLIM4P50479 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM4P50479 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.31■□□□□ 0.84
PDLIM4P50479 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
PDLIM4P50479 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
PDLIM4P50479 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM4P50479 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.3■□□□□ 0.84
PDLIM4P50479 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.3■□□□□ 0.84
PDLIM4P50479 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
PDLIM4P50479 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM4P50479 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM4P50479 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.29■□□□□ 0.84
PDLIM4P50479 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM4P50479 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.29■□□□□ 0.84
PDLIM4P50479 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.29■□□□□ 0.84
PDLIM4P50479 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.29■□□□□ 0.84
PDLIM4P50479 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM4P50479 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
PDLIM4P50479 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
PDLIM4P50479 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.28■□□□□ 0.84
PDLIM4P50479 GUSBP5-201ENST00000418136 578 ntBASIC20.28■□□□□ 0.84
PDLIM4P50479 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.28■□□□□ 0.84
PDLIM4P50479 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
PDLIM4P50479 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM4P50479 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM4P50479 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PDLIM4P50479 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM4P50479 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM4P50479 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM4P50479 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM4P50479 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
PDLIM4P50479 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.27■□□□□ 0.84
PDLIM4P50479 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.27■□□□□ 0.84
PDLIM4P50479 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.27■□□□□ 0.84
PDLIM4P50479 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
PDLIM4P50479 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM4P50479 AC142472.1-201ENST00000612013 1741 ntBASIC20.27■□□□□ 0.83
PDLIM4P50479 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
PDLIM4P50479 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
PDLIM4P50479 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PDLIM4P50479 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.26■□□□□ 0.83
PDLIM4P50479 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM4P50479 AC022616.5-201ENST00000518796 181 ntBASIC20.26■□□□□ 0.83
PDLIM4P50479 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.26■□□□□ 0.83
PDLIM4P50479 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.26■□□□□ 0.83
PDLIM4P50479 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM4P50479 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM4P50479 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM4P50479 BX255925.1-201ENST00000566954 1854 ntBASIC20.25■□□□□ 0.83
PDLIM4P50479 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PDLIM4P50479 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM4P50479 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM4P50479 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms