Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
RFC3P40938 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RFC3P40938 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.99■■□□□ 1.11
RFC3P40938 AL035685.1-201ENST00000636663 812 ntBASIC21.99■■□□□ 1.11
RFC3P40938 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.98■■□□□ 1.11
RFC3P40938 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.98■■□□□ 1.11
RFC3P40938 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
RFC3P40938 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RFC3P40938 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.98■■□□□ 1.11
RFC3P40938 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
RFC3P40938 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RFC3P40938 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.97■■□□□ 1.11
RFC3P40938 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RFC3P40938 RPS2P7-201ENST00000447334 885 ntBASIC21.97■■□□□ 1.11
RFC3P40938 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RFC3P40938 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.97■■□□□ 1.11
RFC3P40938 AC087393.1-201ENST00000582896 145 ntBASIC21.97■■□□□ 1.11
RFC3P40938 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.97■■□□□ 1.11
RFC3P40938 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RFC3P40938 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RFC3P40938 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RFC3P40938 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RFC3P40938 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RFC3P40938 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RFC3P40938 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RFC3P40938 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
RFC3P40938 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RFC3P40938 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.95■■□□□ 1.1
RFC3P40938 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RFC3P40938 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.95■■□□□ 1.1
RFC3P40938 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RFC3P40938 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RFC3P40938 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RFC3P40938 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.94■■□□□ 1.1
RFC3P40938 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RFC3P40938 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RFC3P40938 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
RFC3P40938 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.93■■□□□ 1.1
RFC3P40938 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.93■■□□□ 1.1
RFC3P40938 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RFC3P40938 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RFC3P40938 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RFC3P40938 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RFC3P40938 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RFC3P40938 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RFC3P40938 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RFC3P40938 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.92■■□□□ 1.1
RFC3P40938 MIR4508-201ENST00000584178 70 ntBASIC21.92■■□□□ 1.1
RFC3P40938 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RFC3P40938 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RFC3P40938 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.91■■□□□ 1.1
RFC3P40938 AC009299.2-201ENST00000482477 511 ntBASIC21.91■■□□□ 1.1
RFC3P40938 AC103724.3-201ENST00000564481 992 ntBASIC21.91■■□□□ 1.1
RFC3P40938 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.91■■□□□ 1.1
RFC3P40938 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
RFC3P40938 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFC3P40938 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFC3P40938 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFC3P40938 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RFC3P40938 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
RFC3P40938 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
RFC3P40938 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RFC3P40938 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.89■■□□□ 1.09
RFC3P40938 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.89■■□□□ 1.09
RFC3P40938 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.89■■□□□ 1.09
RFC3P40938 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.89■■□□□ 1.09
RFC3P40938 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.89■■□□□ 1.09
RFC3P40938 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
RFC3P40938 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.89■■□□□ 1.09
RFC3P40938 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.89■■□□□ 1.09
RFC3P40938 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC3P40938 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFC3P40938 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFC3P40938 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFC3P40938 LONRF2P2-201ENST00000439212 571 ntBASIC21.88■■□□□ 1.09
RFC3P40938 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.88■■□□□ 1.09
RFC3P40938 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFC3P40938 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFC3P40938 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFC3P40938 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.87■■□□□ 1.09
RFC3P40938 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC3P40938 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC3P40938 AL031848.2-201ENST00000607670 837 ntBASIC21.87■■□□□ 1.09
RFC3P40938 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC3P40938 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC3P40938 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC3P40938 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC3P40938 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC3P40938 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
RFC3P40938 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC3P40938 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.86■■□□□ 1.09
RFC3P40938 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFC3P40938 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC3P40938 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC3P40938 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC3P40938 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC3P40938 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
RFC3P40938 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC3P40938 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC3P40938 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms