Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SMIM28A0A1B0GU29 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SMIM28A0A1B0GU29 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SMIM28A0A1B0GU29 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
SMIM28A0A1B0GU29 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.01■■□□□ 1.75
SMIM28A0A1B0GU29 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.01■■□□□ 1.75
SMIM28A0A1B0GU29 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.01■■□□□ 1.75
SMIM28A0A1B0GU29 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SMIM28A0A1B0GU29 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SMIM28A0A1B0GU29 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SMIM28A0A1B0GU29 LONRF2P2-201ENST00000439212 571 ntBASIC26■■□□□ 1.75
SMIM28A0A1B0GU29 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SMIM28A0A1B0GU29 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26■■□□□ 1.75
SMIM28A0A1B0GU29 AC019171.1-201ENST00000601251 1056 ntBASIC26■■□□□ 1.75
SMIM28A0A1B0GU29 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC26■■□□□ 1.75
SMIM28A0A1B0GU29 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
SMIM28A0A1B0GU29 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SMIM28A0A1B0GU29 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SMIM28A0A1B0GU29 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.99■■□□□ 1.75
SMIM28A0A1B0GU29 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.99■■□□□ 1.75
SMIM28A0A1B0GU29 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.98■■□□□ 1.75
SMIM28A0A1B0GU29 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
SMIM28A0A1B0GU29 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SMIM28A0A1B0GU29 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
SMIM28A0A1B0GU29 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.98■■□□□ 1.75
SMIM28A0A1B0GU29 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.98■■□□□ 1.75
SMIM28A0A1B0GU29 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMIM28A0A1B0GU29 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMIM28A0A1B0GU29 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMIM28A0A1B0GU29 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMIM28A0A1B0GU29 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
SMIM28A0A1B0GU29 MIR4508-201ENST00000584178 70 ntBASIC25.97■■□□□ 1.75
SMIM28A0A1B0GU29 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMIM28A0A1B0GU29 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMIM28A0A1B0GU29 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SMIM28A0A1B0GU29 AL121749.1-202ENST00000609313 2153 ntBASIC25.96■■□□□ 1.75
SMIM28A0A1B0GU29 YBX1P4-201ENST00000392794 808 ntBASIC25.96■■□□□ 1.75
SMIM28A0A1B0GU29 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC25.96■■□□□ 1.75
SMIM28A0A1B0GU29 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SMIM28A0A1B0GU29 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SMIM28A0A1B0GU29 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
SMIM28A0A1B0GU29 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.95■■□□□ 1.74
SMIM28A0A1B0GU29 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SMIM28A0A1B0GU29 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
SMIM28A0A1B0GU29 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SMIM28A0A1B0GU29 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
SMIM28A0A1B0GU29 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
SMIM28A0A1B0GU29 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC25.93■■□□□ 1.74
SMIM28A0A1B0GU29 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
SMIM28A0A1B0GU29 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SMIM28A0A1B0GU29 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC25.93■■□□□ 1.74
SMIM28A0A1B0GU29 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC25.93■■□□□ 1.74
SMIM28A0A1B0GU29 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
SMIM28A0A1B0GU29 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SMIM28A0A1B0GU29 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
SMIM28A0A1B0GU29 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC25.93■■□□□ 1.74
SMIM28A0A1B0GU29 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
SMIM28A0A1B0GU29 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
SMIM28A0A1B0GU29 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
SMIM28A0A1B0GU29 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SMIM28A0A1B0GU29 AL451085.2-201ENST00000605085 799 ntBASIC25.92■■□□□ 1.74
SMIM28A0A1B0GU29 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
SMIM28A0A1B0GU29 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SMIM28A0A1B0GU29 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.91■■□□□ 1.74
SMIM28A0A1B0GU29 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC25.91■■□□□ 1.74
SMIM28A0A1B0GU29 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMIM28A0A1B0GU29 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.9■■□□□ 1.74
SMIM28A0A1B0GU29 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
SMIM28A0A1B0GU29 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
SMIM28A0A1B0GU29 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
SMIM28A0A1B0GU29 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
SMIM28A0A1B0GU29 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
SMIM28A0A1B0GU29 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC25.88■■□□□ 1.73
SMIM28A0A1B0GU29 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMIM28A0A1B0GU29 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SMIM28A0A1B0GU29 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.87■■□□□ 1.73
SMIM28A0A1B0GU29 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMIM28A0A1B0GU29 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
SMIM28A0A1B0GU29 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SMIM28A0A1B0GU29 AC103724.3-201ENST00000564481 992 ntBASIC25.87■■□□□ 1.73
SMIM28A0A1B0GU29 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMIM28A0A1B0GU29 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
SMIM28A0A1B0GU29 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SMIM28A0A1B0GU29 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMIM28A0A1B0GU29 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
SMIM28A0A1B0GU29 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms