Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 NKAPP1-205ENST00000585790 367 ntBASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 TERC-201ENST00000602385 541 ntBASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 AC091076.1-201ENST00000610741 619 ntBASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.27■□□□□ 0.36
TCRBV7S3A2A0A539 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TCRBV7S3A2A0A539 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 PRYP5-201ENST00000451909 266 ntBASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 AC106795.1-205ENST00000512851 1056 ntBASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TCRBV7S3A2A0A539 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 KRT8P49-201ENST00000604166 1432 ntBASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 ARMC10P1-201ENST00000313754 855 ntBASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 AL021920.2-201ENST00000624828 1351 ntBASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.25■□□□□ 0.35
TCRBV7S3A2A0A539 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms