Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 TOP3BP1-201ENST00000420768 1380 ntBASIC16.6■□□□□ 0.25
VRK3Q8IV63 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.6■□□□□ 0.25
VRK3Q8IV63 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.6■□□□□ 0.25
VRK3Q8IV63 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK3Q8IV63 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 AC092171.3-201ENST00000610122 2651 ntBASIC16.59■□□□□ 0.25
VRK3Q8IV63 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK3Q8IV63 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK3Q8IV63 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.58■□□□□ 0.25
VRK3Q8IV63 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VRK3Q8IV63 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
VRK3Q8IV63 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.58■□□□□ 0.25
VRK3Q8IV63 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
VRK3Q8IV63 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VRK3Q8IV63 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
VRK3Q8IV63 OR6D1P-202ENST00000641007 5290 ntBASIC16.58■□□□□ 0.24
VRK3Q8IV63 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 IGLL3P-201ENST00000412472 434 ntBASIC16.58■□□□□ 0.24
VRK3Q8IV63 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 AC010654.1-201ENST00000615722 808 ntBASIC16.58■□□□□ 0.24
VRK3Q8IV63 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VRK3Q8IV63 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
VRK3Q8IV63 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VRK3Q8IV63 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
VRK3Q8IV63 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VRK3Q8IV63 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VRK3Q8IV63 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
VRK3Q8IV63 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VRK3Q8IV63 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VRK3Q8IV63 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VRK3Q8IV63 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VRK3Q8IV63 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
VRK3Q8IV63 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms