RNA–Protein interactions for RNA: ENST00000377656.6

CNTNAP3-204, Transcript of contactin associated protein like 3, humanhuman

TSL 1 (best) BASIC

Gene CNTNAP3, Length 4,986 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3-204ENST00000377656 DCAF8L2P0C7V8 631 aa31.07■■■□□ 2.56
CNTNAP3-204ENST00000377656 NISCHQ9Y2I1 1504 aa30.07■■■□□ 2.4
CNTNAP3-204ENST00000377656 SUPT5HO00267 1087 aaKnown RBP29.47■■■□□ 2.31
CNTNAP3-204ENST00000377656 SHROOM4Q9ULL8 1493 aa28.89■■■□□ 2.22
CNTNAP3-204ENST00000377656 EHMT2Q96KQ7 1210 aa28.42■■■□□ 2.14
CNTNAP3-204ENST00000377656 APLP2Q06481 763 aa28.04■■■□□ 2.08
CNTNAP3-204ENST00000377656 FAM9AQ8IZU1 332 aaPredicted RBP27.79■■■□□ 2.04
CNTNAP3-204ENST00000377656 PELP1Q8IZL8 1130 aaKnown RBP27.75■■■□□ 2.03
CNTNAP3-204ENST00000377656 TTBK1Q5TCY1 1321 aaPredicted RBP27.46■■□□□ 1.99
CNTNAP3-204ENST00000377656 PCGF6Q9BYE7 350 aa27.42■■□□□ 1.98
CNTNAP3-204ENST00000377656 TRIM41Q8WV44 630 aa27.32■■□□□ 1.96
CNTNAP3-204ENST00000377656 RANGAP1P46060 587 aaPredicted RBP27.25■■□□□ 1.95
CNTNAP3-204ENST00000377656 ATP1B4Q9UN42 357 aaPredicted RBP27.04■■□□□ 1.92
CNTNAP3-204ENST00000377656 ZEB1P37275 1124 aaPredicted RBP27.02■■□□□ 1.92
CNTNAP3-204ENST00000377656 UBTFP17480 764 aaKnown RBP27.01■■□□□ 1.92
CNTNAP3-204ENST00000377656 CCER1Q8TC90 406 aaPredicted RBP27■■□□□ 1.91
CNTNAP3-204ENST00000377656 CENPBP07199 599 aaPredicted RBP26.87■■□□□ 1.89
CNTNAP3-204ENST00000377656 ERICH6Q7L0X2 663 aa26.5■■□□□ 1.83
CNTNAP3-204ENST00000377656 PPARGC1BQ86YN6 1023 aaKnown RBP26.44■■□□□ 1.82
CNTNAP3-204ENST00000377656 NEFLP07196 543 aa26.35■■□□□ 1.81
CNTNAP3-204ENST00000377656 TRIM26Q12899 539 aaPredicted RBP26.3■■□□□ 1.8
CNTNAP3-204ENST00000377656 YTHDC1Q96MU7 727 aaKnown RBP26.27■■□□□ 1.8
CNTNAP3-204ENST00000377656 HRCP23327 699 aa26.27■■□□□ 1.8
CNTNAP3-204ENST00000377656 CHIC1Q5VXU3 224 aa26.23■■□□□ 1.79
CNTNAP3-204ENST00000377656 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.13■■□□□ 1.77
CNTNAP3-204ENST00000377656 HNRNPUL2Q1KMD3 747 aaKnown RBP26.13■■□□□ 1.77
CNTNAP3-204ENST00000377656 ITGAEP38570 1179 aa26.12■■□□□ 1.77
CNTNAP3-204ENST00000377656 LOC105371045A0A1W2PR82 267 aa26.07■■□□□ 1.76
CNTNAP3-204ENST00000377656 MYT1LQ9UL68 1186 aa26.02■■□□□ 1.76
CNTNAP3-204ENST00000377656 POLR3GLQ9BT43 218 aa25.87■■□□□ 1.73
CNTNAP3-204ENST00000377656 PABPN1Q86U42 306 aaKnown RBP eCLIP25.6■■□□□ 1.69
CNTNAP3-204ENST00000377656 ABCC9O60706 1549 aa25.59■■□□□ 1.69
CNTNAP3-204ENST00000377656 CNGB1Q14028 1251 aaPredicted RBP25.58■■□□□ 1.69
CNTNAP3-204ENST00000377656 DAXXQ9UER7 740 aaPredicted RBP25.54■■□□□ 1.68
CNTNAP3-204ENST00000377656 MYT1Q01538 1121 aa25.51■■□□□ 1.67
CNTNAP3-204ENST00000377656 FAM50AQ14320 339 aaKnown RBP25.47■■□□□ 1.67
CNTNAP3-204ENST00000377656 SLC4A1APQ9BWU0 796 aaKnown RBP25.38■■□□□ 1.65
CNTNAP3-204ENST00000377656 DIEXFQ68CQ4 756 aaKnown RBP25.34■■□□□ 1.65
CNTNAP3-204ENST00000377656 TRIM52Q96A61 297 aa25.33■■□□□ 1.65
CNTNAP3-204ENST00000377656 NEUROD1Q13562 356 aa25.2■■□□□ 1.62
CNTNAP3-204ENST00000377656 FBLN2P98095 1184 aa25.11■■□□□ 1.61
CNTNAP3-204ENST00000377656 CLSPNQ9HAW4 1339 aa25.09■■□□□ 1.61
CNTNAP3-204ENST00000377656 ZCCHC6Q5VYS8 1495 aaKnown RBP25.07■■□□□ 1.6
CNTNAP3-204ENST00000377656 ZNF326Q5BKZ1 582 aaKnown RBP25.02■■□□□ 1.6
CNTNAP3-204ENST00000377656 CSRNP3Q8WYN3 585 aa24.98■■□□□ 1.59
CNTNAP3-204ENST00000377656 ANP32CO43423 234 aa24.95■■□□□ 1.58
CNTNAP3-204ENST00000377656 ZNF316A6NFI3 1004 aaPredicted RBP24.92■■□□□ 1.58
CNTNAP3-204ENST00000377656 P3H3Q8IVL6 736 aa24.89■■□□□ 1.58
CNTNAP3-204ENST00000377656 RTL5Q5HYW3 569 aaPredicted RBP24.88■■□□□ 1.57
CNTNAP3-204ENST00000377656 DCAF1Q9Y4B6 1507 aa24.86■■□□□ 1.57
CNTNAP3-204ENST00000377656 ARID3CA6NKF2 412 aa24.8■■□□□ 1.56
CNTNAP3-204ENST00000377656 BCANQ96GW7 911 aa24.74■■□□□ 1.55
CNTNAP3-204ENST00000377656 CDK11AQ9UQ88 783 aaPredicted RBP24.71■■□□□ 1.55
CNTNAP3-204ENST00000377656 GTF3C3Q9Y5Q9 886 aa24.7■■□□□ 1.54
CNTNAP3-204ENST00000377656 ZNF777Q9ULD5 760 aaPredicted RBP24.68■■□□□ 1.54
CNTNAP3-204ENST00000377656 CCDC180Q9P1Z9 1646 aa24.66■■□□□ 1.54
CNTNAP3-204ENST00000377656 ZBTB47Q9UFB7 747 aaPredicted RBP24.66■■□□□ 1.54
CNTNAP3-204ENST00000377656 SCRIBQ14160 1630 aa24.6■■□□□ 1.53
CNTNAP3-204ENST00000377656 NEFMP07197 916 aa24.58■■□□□ 1.52
CNTNAP3-204ENST00000377656 ACIN1Q9UKV3 1341 aaKnown RBP24.55■■□□□ 1.52
CNTNAP3-204ENST00000377656 CANXP27824 592 aaKnown RBP24.54■■□□□ 1.52
CNTNAP3-204ENST00000377656 SLC24A1O60721 1099 aa24.49■■□□□ 1.51
CNTNAP3-204ENST00000377656 TONSLQ96HA7 1378 aa24.41■■□□□ 1.5
CNTNAP3-204ENST00000377656 MYO15BQ96JP2 1530 aa24.41■■□□□ 1.5
CNTNAP3-204ENST00000377656 BCL11AQ9H165 835 aa24.39■■□□□ 1.49
CNTNAP3-204ENST00000377656 ESF1Q9H501 851 aaKnown RBP24.38■■□□□ 1.49
CNTNAP3-204ENST00000377656 NPM1P06748 294 aaKnown RBP eCLIP24.32■■□□□ 1.48
CNTNAP3-204ENST00000377656 CHGAP10645 457 aaKnown RBP24.31■■□□□ 1.48
CNTNAP3-204ENST00000377656 STAG3Q9UJ98 1225 aa24.26■■□□□ 1.47
CNTNAP3-204ENST00000377656 CHIC2Q9UKJ5 165 aa24.22■■□□□ 1.47
CNTNAP3-204ENST00000377656 DDX10Q13206 875 aaKnown RBP24.2■■□□□ 1.46
CNTNAP3-204ENST00000377656 ANP32AP39687 249 aaKnown RBP24.2■■□□□ 1.46
CNTNAP3-204ENST00000377656 HNRNPUQ00839 825 aaKnown RBP eCLIP24.16■■□□□ 1.46
CNTNAP3-204ENST00000377656 RSF1Q96T23 1441 aaPredicted RBP24.16■■□□□ 1.46
CNTNAP3-204ENST00000377656 TSPY4P0CV99 314 aa24.16■■□□□ 1.46
CNTNAP3-204ENST00000377656 TSPY10P0CW01 314 aa24.16■■□□□ 1.46
CNTNAP3-204ENST00000377656 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.13■■□□□ 1.45
CNTNAP3-204ENST00000377656 FAM9BQ8IZU0 186 aa24.12■■□□□ 1.45
CNTNAP3-204ENST00000377656 MTUS2Q5JR59 1369 aa24.12■■□□□ 1.45
CNTNAP3-204ENST00000377656 FKBP8Q14318 412 aa24.1■■□□□ 1.45
CNTNAP3-204ENST00000377656 CHMP7Q8WUX9 453 aaPredicted RBP24.07■■□□□ 1.44
CNTNAP3-204ENST00000377656 NPM2Q86SE8 214 aaKnown RBP24.06■■□□□ 1.44
CNTNAP3-204ENST00000377656 TMC1Q8TDI8 760 aa24.04■■□□□ 1.44
CNTNAP3-204ENST00000377656 PLPPR3Q6T4P5 718 aa24.03■■□□□ 1.44
CNTNAP3-204ENST00000377656 CLIP1P30622 1438 aa24.02■■□□□ 1.44
CNTNAP3-204ENST00000377656 SALL2Q9Y467 1007 aaPredicted RBP24.01■■□□□ 1.43
CNTNAP3-204ENST00000377656 KDM2AQ9Y2K7 1162 aa23.98■■□□□ 1.43
CNTNAP3-204ENST00000377656 EEA1Q15075 1411 aa23.96■■□□□ 1.43
CNTNAP3-204ENST00000377656 SCAF1Q9H7N4 1312 aaKnown RBP23.94■■□□□ 1.42
CNTNAP3-204ENST00000377656 UPF2Q9HAU5 1272 aaKnown RBP23.92■■□□□ 1.42
CNTNAP3-204ENST00000377656 MRS2Q9HD23 443 aa23.92■■□□□ 1.42
CNTNAP3-204ENST00000377656 HSP90AA1P07900 732 aaKnown RBP23.9■■□□□ 1.42
CNTNAP3-204ENST00000377656 WDR43Q15061 677 aaKnown RBP eCLIP23.9■■□□□ 1.42
CNTNAP3-204ENST00000377656 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.88■■□□□ 1.41
CNTNAP3-204ENST00000377656 CEP162Q5TB80 1403 aa23.87■■□□□ 1.41
CNTNAP3-204ENST00000377656 CCDC136Q96JN2 1154 aa23.86■■□□□ 1.41
CNTNAP3-204ENST00000377656 RRP7BPQ9NSQ0 103 aa23.85■■□□□ 1.41
CNTNAP3-204ENST00000377656 RB1CC1Q8TDY2 1594 aa23.85■■□□□ 1.41
CNTNAP3-204ENST00000377656 EIF4G2P78344 907 aaKnown RBP eCLIP23.84■■□□□ 1.41
CNTNAP3-204ENST00000377656 GOLGA3Q08378 1498 aa23.83■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms