RNA–Protein interactions for RNA: ENST00000425707.7

RARA-206, Transcript of retinoic acid receptor alpha, humanhuman

TSL 1 (best) BASIC

Gene RARA, Length 3,041 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-206ENST00000425707 NISCHQ9Y2I1 1504 aa35■■■■□ 3.19
RARA-206ENST00000425707 CCDC180Q9P1Z9 1646 aa29.79■■■□□ 2.36
RARA-206ENST00000425707 ZCCHC6Q5VYS8 1495 aaKnown RBP29.74■■■□□ 2.35
RARA-206ENST00000425707 SHROOM4Q9ULL8 1493 aa29.64■■■□□ 2.34
RARA-206ENST00000425707 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
RARA-206ENST00000425707 DCAF1Q9Y4B6 1507 aa28.96■■■□□ 2.23
RARA-206ENST00000425707 CHIC1Q5VXU3 224 aa28.93■■■□□ 2.22
RARA-206ENST00000425707 MYO15BQ96JP2 1530 aa28.9■■■□□ 2.22
RARA-206ENST00000425707 HRCP23327 699 aa28.83■■■□□ 2.21
RARA-206ENST00000425707 DCAF8L2P0C7V8 631 aa28.31■■■□□ 2.12
RARA-206ENST00000425707 PCGF6Q9BYE7 350 aa28.29■■■□□ 2.12
RARA-206ENST00000425707 ABCC9O60706 1549 aa28.17■■■□□ 2.1
RARA-206ENST00000425707 TRIM26Q12899 539 aaPredicted RBP27.91■■■□□ 2.06
RARA-206ENST00000425707 LOC105371045A0A1W2PR82 267 aa27.87■■■□□ 2.05
RARA-206ENST00000425707 PPARGC1BQ86YN6 1023 aaKnown RBP27.82■■■□□ 2.04
RARA-206ENST00000425707 RSF1Q96T23 1441 aaPredicted RBP27.77■■■□□ 2.04
RARA-206ENST00000425707 RB1CC1Q8TDY2 1594 aa27.68■■■□□ 2.02
RARA-206ENST00000425707 ZEB1P37275 1124 aaPredicted RBP27.65■■■□□ 2.02
RARA-206ENST00000425707 SCRIBQ14160 1630 aa27.61■■■□□ 2.01
RARA-206ENST00000425707 TRIM41Q8WV44 630 aa27.43■■□□□ 1.98
RARA-206ENST00000425707 NACADO15069 1562 aa27.35■■□□□ 1.97
RARA-206ENST00000425707 MROH2BQ7Z745 1585 aa27.12■■□□□ 1.93
RARA-206ENST00000425707 CECR2Q9BXF3 1484 aa27.08■■□□□ 1.93
RARA-206ENST00000425707 BAZ1AQ9NRL2 1556 aaPredicted RBP27.05■■□□□ 1.92
RARA-206ENST00000425707 PELP1Q8IZL8 1130 aaKnown RBP27.05■■□□□ 1.92
RARA-206ENST00000425707 EIF4G1Q04637 1599 aaKnown RBP27.03■■□□□ 1.92
RARA-206ENST00000425707 WIZO95785 1651 aa27■■□□□ 1.91
RARA-206ENST00000425707 FAM9AQ8IZU1 332 aaPredicted RBP26.96■■□□□ 1.91
RARA-206ENST00000425707 WRNQ14191 1432 aaPredicted RBP eCLIP26.76■■□□□ 1.87
RARA-206ENST00000425707 TOP2AP11388 1531 aaKnown RBP26.73■■□□□ 1.87
RARA-206ENST00000425707 SCAF1Q9H7N4 1312 aaKnown RBP26.7■■□□□ 1.86
RARA-206ENST00000425707 SMARCA4P51532 1647 aa26.59■■□□□ 1.85
RARA-206ENST00000425707 EEA1Q15075 1411 aa26.56■■□□□ 1.84
RARA-206ENST00000425707 SMARCA2P51531 1590 aa26.55■■□□□ 1.84
RARA-206ENST00000425707 CCER1Q8TC90 406 aaPredicted RBP26.5■■□□□ 1.83
RARA-206ENST00000425707 EHMT2Q96KQ7 1210 aa26.5■■□□□ 1.83
RARA-206ENST00000425707 TNIKQ9UKE5 1360 aa26.49■■□□□ 1.83
RARA-206ENST00000425707 CCDC88BA6NC98 1476 aa26.49■■□□□ 1.83
RARA-206ENST00000425707 CEP162Q5TB80 1403 aa26.46■■□□□ 1.83
RARA-206ENST00000425707 ABCC8Q09428 1581 aa26.45■■□□□ 1.83
RARA-206ENST00000425707 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.44■■□□□ 1.82
RARA-206ENST00000425707 ACIN1Q9UKV3 1341 aaKnown RBP26.42■■□□□ 1.82
RARA-206ENST00000425707 PABPN1Q86U42 306 aaKnown RBP eCLIP26.38■■□□□ 1.81
RARA-206ENST00000425707 UNC13AQ9UPW8 1703 aa26.35■■□□□ 1.81
RARA-206ENST00000425707 DIEXFQ68CQ4 756 aaKnown RBP26.28■■□□□ 1.8
RARA-206ENST00000425707 SOGA1O94964 1423 aa26.28■■□□□ 1.8
RARA-206ENST00000425707 CENPBP07199 599 aaPredicted RBP26.26■■□□□ 1.79
RARA-206ENST00000425707 GOLGA3Q08378 1498 aa26.26■■□□□ 1.79
RARA-206ENST00000425707 CSRNP3Q8WYN3 585 aa26.23■■□□□ 1.79
RARA-206ENST00000425707 NEUROD1Q13562 356 aa26.21■■□□□ 1.79
RARA-206ENST00000425707 PEG3Q9GZU2 1588 aa26.21■■□□□ 1.79
RARA-206ENST00000425707 KIF21BO75037 1637 aa26.16■■□□□ 1.78
RARA-206ENST00000425707 RUSC2Q8N2Y8 1516 aa26.09■■□□□ 1.77
RARA-206ENST00000425707 CEP164Q9UPV0 1460 aa26.09■■□□□ 1.77
RARA-206ENST00000425707 ZNF316A6NFI3 1004 aaPredicted RBP26.06■■□□□ 1.76
RARA-206ENST00000425707 BAZ1BQ9UIG0 1483 aaKnown RBP26.01■■□□□ 1.75
RARA-206ENST00000425707 UBTFP17480 764 aaKnown RBP26■■□□□ 1.75
RARA-206ENST00000425707 GTF3C3Q9Y5Q9 886 aa26■■□□□ 1.75
RARA-206ENST00000425707 BICRAQ9NZM4 1560 aa25.95■■□□□ 1.75
RARA-206ENST00000425707 SYNJ1O43426 1573 aa25.94■■□□□ 1.74
RARA-206ENST00000425707 MYT1Q01538 1121 aa25.91■■□□□ 1.74
RARA-206ENST00000425707 VPS8Q8N3P4 1428 aa25.9■■□□□ 1.74
RARA-206ENST00000425707 CLIP1P30622 1438 aa25.88■■□□□ 1.73
RARA-206ENST00000425707 TTBK1Q5TCY1 1321 aaPredicted RBP25.83■■□□□ 1.73
RARA-206ENST00000425707 ATAD2BQ9ULI0 1458 aa25.73■■□□□ 1.71
RARA-206ENST00000425707 CLSPNQ9HAW4 1339 aa25.73■■□□□ 1.71
RARA-206ENST00000425707 TOP2BQ02880 1626 aa25.71■■□□□ 1.71
RARA-206ENST00000425707 ERICH3Q5RHP9 1530 aa25.68■■□□□ 1.7
RARA-206ENST00000425707 RAPGEF2Q9Y4G8 1499 aa25.67■■□□□ 1.7
RARA-206ENST00000425707 BIVM-ERCC5R4GMW8 1640 aa25.67■■□□□ 1.7
RARA-206ENST00000425707 APLP2Q06481 763 aa25.62■■□□□ 1.69
RARA-206ENST00000425707 HNRNPUL2Q1KMD3 747 aaKnown RBP25.6■■□□□ 1.69
RARA-206ENST00000425707 MIER1Q8N108 512 aa25.6■■□□□ 1.69
RARA-206ENST00000425707 PRXQ9BXM0 1461 aa25.53■■□□□ 1.68
RARA-206ENST00000425707 ARAP1Q96P48 1450 aa25.45■■□□□ 1.67
RARA-206ENST00000425707 CUX2O14529 1486 aa25.45■■□□□ 1.66
RARA-206ENST00000425707 DHX57Q6P158 1386 aaKnown RBP25.45■■□□□ 1.66
RARA-206ENST00000425707 YTHDC1Q96MU7 727 aaKnown RBP25.43■■□□□ 1.66
RARA-206ENST00000425707 RRBP1Q9P2E9 1410 aaKnown RBP25.42■■□□□ 1.66
RARA-206ENST00000425707 HMGXB3Q12766 1538 aa25.35■■□□□ 1.65
RARA-206ENST00000425707 KIF27Q86VH2 1401 aa25.27■■□□□ 1.64
RARA-206ENST00000425707 CUX1P39880 1505 aa25.25■■□□□ 1.63
RARA-206ENST00000425707 NCAPD3P42695 1498 aa25.24■■□□□ 1.63
RARA-206ENST00000425707 MAP3K1Q13233 1512 aa25.22■■□□□ 1.63
RARA-206ENST00000425707 CCNB3Q8WWL7 1395 aa25.17■■□□□ 1.62
RARA-206ENST00000425707 KANK4Q5T7N3 995 aaPredicted RBP25.17■■□□□ 1.62
RARA-206ENST00000425707 ARHGAP35Q9NRY4 1499 aa25.15■■□□□ 1.62
RARA-206ENST00000425707 PRDM2Q13029 1718 aa25.15■■□□□ 1.62
RARA-206ENST00000425707 CFTRP13569 1480 aa25.13■■□□□ 1.61
RARA-206ENST00000425707 RANGAP1P46060 587 aaPredicted RBP25.07■■□□□ 1.6
RARA-206ENST00000425707 TIAM1Q13009 1591 aa25.04■■□□□ 1.6
RARA-206ENST00000425707 SUPT16HQ9Y5B9 1047 aaKnown RBP25.03■■□□□ 1.6
RARA-206ENST00000425707 MAPKBP1O60336 1514 aa25■■□□□ 1.59
RARA-206ENST00000425707 DNAJC5BQ9UF47 199 aa24.94■■□□□ 1.58
RARA-206ENST00000425707 RAB3GAP2Q9H2M9 1393 aa24.94■■□□□ 1.58
RARA-206ENST00000425707 CFAP43Q8NDM7 1665 aa24.92■■□□□ 1.58
RARA-206ENST00000425707 SETD5Q9C0A6 1442 aa24.91■■□□□ 1.58
RARA-206ENST00000425707 LRRC9Q6ZRR7 1453 aa24.9■■□□□ 1.58
RARA-206ENST00000425707 IGF1RP08069 1367 aa24.89■■□□□ 1.58
RARA-206ENST00000425707 TIMELESSQ9UNS1 1208 aa24.89■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms