RNA–Protein interactions for RNA: ENST00000220562.8

EXTL3-201, Transcript of exostosin like glycosyltransferase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXTL3, Length 6,483 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXTL3-201ENST00000220562 DCAF8L2P0C7V8 631 aa30.85■■■□□ 2.53
EXTL3-201ENST00000220562 SUPT5HO00267 1087 aaKnown RBP29.33■■■□□ 2.29
EXTL3-201ENST00000220562 SHROOM4Q9ULL8 1493 aa28.78■■■□□ 2.2
EXTL3-201ENST00000220562 NISCHQ9Y2I1 1504 aa28.75■■■□□ 2.19
EXTL3-201ENST00000220562 EHMT2Q96KQ7 1210 aa28.7■■■□□ 2.18
EXTL3-201ENST00000220562 PELP1Q8IZL8 1130 aaKnown RBP28.26■■■□□ 2.11
EXTL3-201ENST00000220562 APLP2Q06481 763 aa28.04■■■□□ 2.08
EXTL3-201ENST00000220562 FAM9AQ8IZU1 332 aaPredicted RBP27.76■■■□□ 2.03
EXTL3-201ENST00000220562 TTBK1Q5TCY1 1321 aaPredicted RBP27.75■■■□□ 2.03
EXTL3-201ENST00000220562 PCGF6Q9BYE7 350 aa27.54■■■□□ 2
EXTL3-201ENST00000220562 RANGAP1P46060 587 aaPredicted RBP27.38■■□□□ 1.97
EXTL3-201ENST00000220562 ERICH6Q7L0X2 663 aa27.23■■□□□ 1.95
EXTL3-201ENST00000220562 CENPBP07199 599 aaPredicted RBP27.18■■□□□ 1.94
EXTL3-201ENST00000220562 CCER1Q8TC90 406 aaPredicted RBP27.14■■□□□ 1.94
EXTL3-201ENST00000220562 ATP1B4Q9UN42 357 aaPredicted RBP27.14■■□□□ 1.93
EXTL3-201ENST00000220562 TRIM41Q8WV44 630 aa27.1■■□□□ 1.93
EXTL3-201ENST00000220562 ZEB1P37275 1124 aaPredicted RBP27.09■■□□□ 1.93
EXTL3-201ENST00000220562 UBTFP17480 764 aaKnown RBP26.88■■□□□ 1.89
EXTL3-201ENST00000220562 YTHDC1Q96MU7 727 aaKnown RBP26.76■■□□□ 1.87
EXTL3-201ENST00000220562 NEFLP07196 543 aa26.69■■□□□ 1.86
EXTL3-201ENST00000220562 PPARGC1BQ86YN6 1023 aaKnown RBP26.58■■□□□ 1.85
EXTL3-201ENST00000220562 TRIM26Q12899 539 aaPredicted RBP26.26■■□□□ 1.79
EXTL3-201ENST00000220562 ITGAEP38570 1179 aa26.18■■□□□ 1.78
EXTL3-201ENST00000220562 MYT1Q01538 1121 aa26.15■■□□□ 1.78
EXTL3-201ENST00000220562 POLR3GLQ9BT43 218 aa26.14■■□□□ 1.78
EXTL3-201ENST00000220562 MYT1LQ9UL68 1186 aa26.1■■□□□ 1.77
EXTL3-201ENST00000220562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.07■■□□□ 1.76
EXTL3-201ENST00000220562 HNRNPUL2Q1KMD3 747 aaKnown RBP26.07■■□□□ 1.76
EXTL3-201ENST00000220562 DAXXQ9UER7 740 aaPredicted RBP26.02■■□□□ 1.76
EXTL3-201ENST00000220562 HRCP23327 699 aa25.99■■□□□ 1.75
EXTL3-201ENST00000220562 LOC105371045A0A1W2PR82 267 aa25.92■■□□□ 1.74
EXTL3-201ENST00000220562 CNGB1Q14028 1251 aaPredicted RBP25.91■■□□□ 1.74
EXTL3-201ENST00000220562 CHIC1Q5VXU3 224 aa25.73■■□□□ 1.71
EXTL3-201ENST00000220562 SLC4A1APQ9BWU0 796 aaKnown RBP25.66■■□□□ 1.7
EXTL3-201ENST00000220562 DIEXFQ68CQ4 756 aaKnown RBP25.48■■□□□ 1.67
EXTL3-201ENST00000220562 FAM50AQ14320 339 aaKnown RBP25.46■■□□□ 1.67
EXTL3-201ENST00000220562 ZNF316A6NFI3 1004 aaPredicted RBP25.45■■□□□ 1.66
EXTL3-201ENST00000220562 CLSPNQ9HAW4 1339 aa25.43■■□□□ 1.66
EXTL3-201ENST00000220562 RTL5Q5HYW3 569 aaPredicted RBP25.36■■□□□ 1.65
EXTL3-201ENST00000220562 TRIM52Q96A61 297 aa25.36■■□□□ 1.65
EXTL3-201ENST00000220562 NEUROD1Q13562 356 aa25.31■■□□□ 1.64
EXTL3-201ENST00000220562 BCANQ96GW7 911 aa25.17■■□□□ 1.62
EXTL3-201ENST00000220562 PABPN1Q86U42 306 aaKnown RBP eCLIP25.11■■□□□ 1.61
EXTL3-201ENST00000220562 ZNF326Q5BKZ1 582 aaKnown RBP25.11■■□□□ 1.61
EXTL3-201ENST00000220562 ANP32CO43423 234 aa25.05■■□□□ 1.6
EXTL3-201ENST00000220562 GTF3C3Q9Y5Q9 886 aa25■■□□□ 1.59
EXTL3-201ENST00000220562 ABCC9O60706 1549 aa24.98■■□□□ 1.59
EXTL3-201ENST00000220562 CDK11AQ9UQ88 783 aaPredicted RBP24.93■■□□□ 1.58
EXTL3-201ENST00000220562 ZBTB47Q9UFB7 747 aaPredicted RBP24.91■■□□□ 1.58
EXTL3-201ENST00000220562 FBLN2P98095 1184 aa24.88■■□□□ 1.57
EXTL3-201ENST00000220562 CANXP27824 592 aaKnown RBP24.83■■□□□ 1.57
EXTL3-201ENST00000220562 BCL11AQ9H165 835 aa24.82■■□□□ 1.56
EXTL3-201ENST00000220562 SLC24A1O60721 1099 aa24.81■■□□□ 1.56
EXTL3-201ENST00000220562 ARID3CA6NKF2 412 aa24.74■■□□□ 1.55
EXTL3-201ENST00000220562 P3H3Q8IVL6 736 aa24.74■■□□□ 1.55
EXTL3-201ENST00000220562 NEFMP07197 916 aa24.64■■□□□ 1.53
EXTL3-201ENST00000220562 ZNF777Q9ULD5 760 aaPredicted RBP24.59■■□□□ 1.53
EXTL3-201ENST00000220562 ACIN1Q9UKV3 1341 aaKnown RBP24.53■■□□□ 1.52
EXTL3-201ENST00000220562 ANP32AP39687 249 aaKnown RBP24.53■■□□□ 1.52
EXTL3-201ENST00000220562 NPM2Q86SE8 214 aaKnown RBP24.52■■□□□ 1.52
EXTL3-201ENST00000220562 CSRNP3Q8WYN3 585 aa24.49■■□□□ 1.51
EXTL3-201ENST00000220562 FKBP8Q14318 412 aa24.35■■□□□ 1.49
EXTL3-201ENST00000220562 TONSLQ96HA7 1378 aa24.32■■□□□ 1.48
EXTL3-201ENST00000220562 CHGAP10645 457 aaKnown RBP24.29■■□□□ 1.48
EXTL3-201ENST00000220562 FAM9BQ8IZU0 186 aa24.24■■□□□ 1.47
EXTL3-201ENST00000220562 HNRNPUQ00839 825 aaKnown RBP eCLIP24.24■■□□□ 1.47
EXTL3-201ENST00000220562 ESF1Q9H501 851 aaKnown RBP24.24■■□□□ 1.47
EXTL3-201ENST00000220562 STAG3Q9UJ98 1225 aa24.22■■□□□ 1.47
EXTL3-201ENST00000220562 HSP90AA1P07900 732 aaKnown RBP24.21■■□□□ 1.47
EXTL3-201ENST00000220562 SCRIBQ14160 1630 aa24.2■■□□□ 1.46
EXTL3-201ENST00000220562 DDX10Q13206 875 aaKnown RBP24.19■■□□□ 1.46
EXTL3-201ENST00000220562 SALL2Q9Y467 1007 aaPredicted RBP24.18■■□□□ 1.46
EXTL3-201ENST00000220562 PLPPR3Q6T4P5 718 aa24.17■■□□□ 1.46
EXTL3-201ENST00000220562 ANP32BQ92688 251 aaKnown RBP24.17■■□□□ 1.46
EXTL3-201ENST00000220562 UPF2Q9HAU5 1272 aaKnown RBP24.14■■□□□ 1.45
EXTL3-201ENST00000220562 CHIC2Q9UKJ5 165 aa24.1■■□□□ 1.45
EXTL3-201ENST00000220562 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.07■■□□□ 1.44
EXTL3-201ENST00000220562 EIF5BO60841 1220 aaKnown RBP24.05■■□□□ 1.44
EXTL3-201ENST00000220562 TMC1Q8TDI8 760 aa24.03■■□□□ 1.44
EXTL3-201ENST00000220562 DCAF1Q9Y4B6 1507 aa24.02■■□□□ 1.44
EXTL3-201ENST00000220562 CCDC136Q96JN2 1154 aa24■■□□□ 1.43
EXTL3-201ENST00000220562 WDR43Q15061 677 aaKnown RBP eCLIP23.98■■□□□ 1.43
EXTL3-201ENST00000220562 NPM1P06748 294 aaKnown RBP eCLIP23.97■■□□□ 1.43
EXTL3-201ENST00000220562 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.96■■□□□ 1.43
EXTL3-201ENST00000220562 KDM2AQ9Y2K7 1162 aa23.96■■□□□ 1.43
EXTL3-201ENST00000220562 NBR1Q14596 966 aa23.95■■□□□ 1.43
EXTL3-201ENST00000220562 MRS2Q9HD23 443 aa23.9■■□□□ 1.42
EXTL3-201ENST00000220562 ARXQ96QS3 562 aa23.88■■□□□ 1.41
EXTL3-201ENST00000220562 IRX6P78412 446 aaPredicted RBP23.86■■□□□ 1.41
EXTL3-201ENST00000220562 HIRIP3Q9BW71 556 aaPredicted RBP23.84■■□□□ 1.41
EXTL3-201ENST00000220562 MTUS2Q5JR59 1369 aa23.81■■□□□ 1.4
EXTL3-201ENST00000220562 TSPY4P0CV99 314 aa23.81■■□□□ 1.4
EXTL3-201ENST00000220562 TSPY10P0CW01 314 aa23.81■■□□□ 1.4
EXTL3-201ENST00000220562 MIER1Q8N108 512 aa23.78■■□□□ 1.4
EXTL3-201ENST00000220562 SCAF1Q9H7N4 1312 aaKnown RBP23.78■■□□□ 1.4
EXTL3-201ENST00000220562 ZCCHC6Q5VYS8 1495 aaKnown RBP23.75■■□□□ 1.39
EXTL3-201ENST00000220562 SENP3Q9H4L4 574 aaPredicted RBP23.73■■□□□ 1.39
EXTL3-201ENST00000220562 MYH16Q9H6N6 1097 aa23.73■■□□□ 1.39
EXTL3-201ENST00000220562 RRP7BPQ9NSQ0 103 aa23.7■■□□□ 1.39
EXTL3-201ENST00000220562 ZBTB7CA1YPR0 619 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms