Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.35■□□□□ 0.53
KRT39Q6A163 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.35■□□□□ 0.53
KRT39Q6A163 AC092910.1-201ENST00000482027 1129 ntBASIC18.35■□□□□ 0.53
KRT39Q6A163 SLC25A6P2-201ENST00000497974 877 ntBASIC18.35■□□□□ 0.53
KRT39Q6A163 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
KRT39Q6A163 AC093909.1-201ENST00000504731 1122 ntBASIC18.35■□□□□ 0.53
KRT39Q6A163 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.35■□□□□ 0.53
KRT39Q6A163 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
KRT39Q6A163 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.35■□□□□ 0.53
KRT39Q6A163 AC117500.6-201ENST00000624871 588 ntBASIC18.35■□□□□ 0.53
KRT39Q6A163 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
KRT39Q6A163 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.35■□□□□ 0.53
KRT39Q6A163 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 AL645728.1-201ENST00000366221 2101 ntBASIC18.35■□□□□ 0.53
KRT39Q6A163 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
KRT39Q6A163 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
KRT39Q6A163 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
KRT39Q6A163 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.34■□□□□ 0.53
KRT39Q6A163 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.34■□□□□ 0.53
KRT39Q6A163 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.34■□□□□ 0.53
KRT39Q6A163 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.34■□□□□ 0.53
KRT39Q6A163 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.34■□□□□ 0.53
KRT39Q6A163 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.34■□□□□ 0.53
KRT39Q6A163 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.34■□□□□ 0.53
KRT39Q6A163 REXO1L3P-201ENST00000622202 1288 ntBASIC18.34■□□□□ 0.53
KRT39Q6A163 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
KRT39Q6A163 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
KRT39Q6A163 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
KRT39Q6A163 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
KRT39Q6A163 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.33■□□□□ 0.53
KRT39Q6A163 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.33■□□□□ 0.53
KRT39Q6A163 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.53
KRT39Q6A163 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
KRT39Q6A163 HLA-A-201ENST00000376802 1334 ntBASIC18.33■□□□□ 0.53
KRT39Q6A163 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
KRT39Q6A163 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
KRT39Q6A163 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
KRT39Q6A163 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
KRT39Q6A163 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.33■□□□□ 0.52
KRT39Q6A163 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.33■□□□□ 0.52
KRT39Q6A163 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.33■□□□□ 0.52
KRT39Q6A163 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.33■□□□□ 0.52
KRT39Q6A163 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.33■□□□□ 0.52
KRT39Q6A163 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.33■□□□□ 0.52
KRT39Q6A163 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.33■□□□□ 0.52
KRT39Q6A163 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
KRT39Q6A163 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.33■□□□□ 0.52
KRT39Q6A163 AC116407.3-201ENST00000623905 1129 ntBASIC18.33■□□□□ 0.52
KRT39Q6A163 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.33■□□□□ 0.52
KRT39Q6A163 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
KRT39Q6A163 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
KRT39Q6A163 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
KRT39Q6A163 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.33■□□□□ 0.52
KRT39Q6A163 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
KRT39Q6A163 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
KRT39Q6A163 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms