Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VCPP55072 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
VCPP55072 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.24■□□□□ 0.51
VCPP55072 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.24■□□□□ 0.51
VCPP55072 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.24■□□□□ 0.51
VCPP55072 AC190387.1-201ENST00000551683 408 ntBASIC18.24■□□□□ 0.51
VCPP55072 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.24■□□□□ 0.51
VCPP55072 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.24■□□□□ 0.51
VCPP55072 AL031432.2-201ENST00000566714 459 ntBASIC18.24■□□□□ 0.51
VCPP55072 AL928711.1-201ENST00000570165 459 ntBASIC18.24■□□□□ 0.51
VCPP55072 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.24■□□□□ 0.51
VCPP55072 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.24■□□□□ 0.51
VCPP55072 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.24■□□□□ 0.51
VCPP55072 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.24■□□□□ 0.51
VCPP55072 AC004817.3-201ENST00000602957 2129 ntBASIC18.24■□□□□ 0.51
VCPP55072 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
VCPP55072 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VCPP55072 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.24■□□□□ 0.51
VCPP55072 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCPP55072 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
VCPP55072 LYSMD4-203ENST00000378904 2122 ntBASIC18.23■□□□□ 0.51
VCPP55072 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.23■□□□□ 0.51
VCPP55072 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
VCPP55072 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 GPR89P-201ENST00000407924 1495 ntBASIC18.23■□□□□ 0.51
VCPP55072 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
VCPP55072 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.23■□□□□ 0.51
VCPP55072 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.23■□□□□ 0.51
VCPP55072 AC122714.2-201ENST00000502787 707 ntBASIC18.23■□□□□ 0.51
VCPP55072 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.23■□□□□ 0.51
VCPP55072 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.23■□□□□ 0.51
VCPP55072 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VCPP55072 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
VCPP55072 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.23■□□□□ 0.51
VCPP55072 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCPP55072 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCPP55072 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
VCPP55072 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VCPP55072 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.22■□□□□ 0.51
VCPP55072 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCPP55072 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VCPP55072 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
VCPP55072 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCPP55072 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCPP55072 GK-202ENST00000378941 458 ntTSL 3 BASIC18.22■□□□□ 0.51
VCPP55072 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.22■□□□□ 0.51
VCPP55072 COX5BP2-201ENST00000392354 334 ntBASIC18.22■□□□□ 0.51
VCPP55072 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCPP55072 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCPP55072 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.22■□□□□ 0.51
VCPP55072 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.22■□□□□ 0.51
VCPP55072 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.22■□□□□ 0.51
VCPP55072 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.22■□□□□ 0.51
VCPP55072 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC18.22■□□□□ 0.51
VCPP55072 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.22■□□□□ 0.51
VCPP55072 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VCPP55072 AC006557.2-201ENST00000592985 1240 ntBASIC18.22■□□□□ 0.51
VCPP55072 AC005498.2-205ENST00000593218 784 ntBASIC18.22■□□□□ 0.51
VCPP55072 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
VCPP55072 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.22■□□□□ 0.51
VCPP55072 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms