RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 NISCHQ9Y2I1 1504 aa38.51■■■■□ 3.75
VRK1-201ENST00000216639 CCDC180Q9P1Z9 1646 aa33.43■■■□□ 2.94
VRK1-201ENST00000216639 ZCCHC6Q5VYS8 1495 aaKnown RBP32.41■■■□□ 2.78
VRK1-201ENST00000216639 DCAF1Q9Y4B6 1507 aa31.85■■■□□ 2.69
VRK1-201ENST00000216639 DCAF8L2P0C7V8 631 aa31.77■■■□□ 2.68
VRK1-201ENST00000216639 SHROOM4Q9ULL8 1493 aa31.67■■■□□ 2.66
VRK1-201ENST00000216639 MYO15BQ96JP2 1530 aa31.34■■■□□ 2.61
VRK1-201ENST00000216639 ABCC9O60706 1549 aa31.31■■■□□ 2.6
VRK1-201ENST00000216639 NACADO15069 1562 aa31.07■■■□□ 2.56
VRK1-201ENST00000216639 SCRIBQ14160 1630 aa30.79■■■□□ 2.52
VRK1-201ENST00000216639 RB1CC1Q8TDY2 1594 aa30.73■■■□□ 2.51
VRK1-201ENST00000216639 SUPT5HO00267 1087 aaKnown RBP30.67■■■□□ 2.5
VRK1-201ENST00000216639 UNC13AQ9UPW8 1703 aa30.05■■■□□ 2.4
VRK1-201ENST00000216639 RSF1Q96T23 1441 aaPredicted RBP30■■■□□ 2.39
VRK1-201ENST00000216639 CECR2Q9BXF3 1484 aa29.86■■■□□ 2.37
VRK1-201ENST00000216639 MROH2BQ7Z745 1585 aa29.74■■■□□ 2.35
VRK1-201ENST00000216639 BAZ1AQ9NRL2 1556 aaPredicted RBP29.74■■■□□ 2.35
VRK1-201ENST00000216639 BICRAQ9NZM4 1560 aa29.73■■■□□ 2.35
VRK1-201ENST00000216639 PABPN1Q86U42 306 aaKnown RBP eCLIP29.59■■■□□ 2.33
VRK1-201ENST00000216639 WIZO95785 1651 aa29.53■■■□□ 2.32
VRK1-201ENST00000216639 SMARCA4P51532 1647 aa29.52■■■□□ 2.32
VRK1-201ENST00000216639 CHIC1Q5VXU3 224 aa29.51■■■□□ 2.32
VRK1-201ENST00000216639 TOP2AP11388 1531 aaKnown RBP29.25■■■□□ 2.27
VRK1-201ENST00000216639 PEG3Q9GZU2 1588 aa29.15■■■□□ 2.26
VRK1-201ENST00000216639 SMARCA2P51531 1590 aa28.98■■■□□ 2.23
VRK1-201ENST00000216639 ATAD2BQ9ULI0 1458 aa28.96■■■□□ 2.23
VRK1-201ENST00000216639 CCDC88BA6NC98 1476 aa28.95■■■□□ 2.22
VRK1-201ENST00000216639 BAZ1BQ9UIG0 1483 aaKnown RBP28.85■■■□□ 2.21
VRK1-201ENST00000216639 TRIM41Q8WV44 630 aa28.85■■■□□ 2.21
VRK1-201ENST00000216639 EIF4G1Q04637 1599 aaKnown RBP28.85■■■□□ 2.21
VRK1-201ENST00000216639 NCAPD3P42695 1498 aa28.66■■■□□ 2.18
VRK1-201ENST00000216639 HMGXB3Q12766 1538 aa28.65■■■□□ 2.18
VRK1-201ENST00000216639 ABCC8Q09428 1581 aa28.44■■■□□ 2.14
VRK1-201ENST00000216639 LOC105371045A0A1W2PR82 267 aa28.38■■■□□ 2.13
VRK1-201ENST00000216639 CC2D2AQ9P2K1 1620 aa28.33■■■□□ 2.13
VRK1-201ENST00000216639 FAM9AQ8IZU1 332 aaPredicted RBP28.3■■■□□ 2.12
VRK1-201ENST00000216639 WRNQ14191 1432 aaPredicted RBP eCLIP28.27■■■□□ 2.12
VRK1-201ENST00000216639 CFTRP13569 1480 aa28.12■■■□□ 2.09
VRK1-201ENST00000216639 SYNJ1O43426 1573 aa28.09■■■□□ 2.09
VRK1-201ENST00000216639 EEA1Q15075 1411 aa28.08■■■□□ 2.09
VRK1-201ENST00000216639 PRDM2Q13029 1718 aa27.99■■■□□ 2.07
VRK1-201ENST00000216639 SOGA1O94964 1423 aa27.99■■■□□ 2.07
VRK1-201ENST00000216639 TOP2BQ02880 1626 aa27.97■■■□□ 2.07
VRK1-201ENST00000216639 CADPSQ9ULU8 1353 aa27.97■■■□□ 2.07
VRK1-201ENST00000216639 BIVM-ERCC5R4GMW8 1640 aa27.93■■■□□ 2.06
VRK1-201ENST00000216639 EHMT2Q96KQ7 1210 aa27.88■■■□□ 2.05
VRK1-201ENST00000216639 CSRNP3Q8WYN3 585 aa27.87■■■□□ 2.05
VRK1-201ENST00000216639 RUSC2Q8N2Y8 1516 aa27.83■■■□□ 2.05
VRK1-201ENST00000216639 CUX1P39880 1505 aa27.8■■■□□ 2.04
VRK1-201ENST00000216639 GOLGA3Q08378 1498 aa27.69■■■□□ 2.02
VRK1-201ENST00000216639 FANCD2Q9BXW9 1451 aa27.66■■■□□ 2.02
VRK1-201ENST00000216639 CEP164Q9UPV0 1460 aa27.66■■■□□ 2.02
VRK1-201ENST00000216639 TNIKQ9UKE5 1360 aa27.65■■■□□ 2.02
VRK1-201ENST00000216639 KIF21BO75037 1637 aa27.65■■■□□ 2.02
VRK1-201ENST00000216639 LAMC3Q9Y6N6 1575 aa27.64■■■□□ 2.02
VRK1-201ENST00000216639 UBTFP17480 764 aaKnown RBP27.58■■■□□ 2.01
VRK1-201ENST00000216639 NESP48681 1621 aa27.56■■■□□ 2
VRK1-201ENST00000216639 KIF27Q86VH2 1401 aa27.54■■■□□ 2
VRK1-201ENST00000216639 CEP162Q5TB80 1403 aa27.52■■■□□ 2
VRK1-201ENST00000216639 PCGF6Q9BYE7 350 aa27.5■■□□□ 1.99
VRK1-201ENST00000216639 DNMBPQ6XZF7 1577 aa27.47■■□□□ 1.99
VRK1-201ENST00000216639 FGD5Q6ZNL6 1462 aa27.46■■□□□ 1.99
VRK1-201ENST00000216639 PDS5BQ9NTI5 1447 aa27.45■■□□□ 1.99
VRK1-201ENST00000216639 TRIM26Q12899 539 aaPredicted RBP27.44■■□□□ 1.98
VRK1-201ENST00000216639 DNAJC5BQ9UF47 199 aa27.42■■□□□ 1.98
VRK1-201ENST00000216639 ERICH3Q5RHP9 1530 aa27.41■■□□□ 1.98
VRK1-201ENST00000216639 RAPGEF2Q9Y4G8 1499 aa27.41■■□□□ 1.98
VRK1-201ENST00000216639 PRXQ9BXM0 1461 aa27.39■■□□□ 1.98
VRK1-201ENST00000216639 TOPBP1Q92547 1522 aa27.38■■□□□ 1.97
VRK1-201ENST00000216639 CUX2O14529 1486 aa27.36■■□□□ 1.97
VRK1-201ENST00000216639 POLA1P09884 1462 aaPredicted RBP27.27■■□□□ 1.96
VRK1-201ENST00000216639 URB2Q14146 1524 aaKnown RBP27.26■■□□□ 1.95
VRK1-201ENST00000216639 CLIP1P30622 1438 aa27.25■■□□□ 1.95
VRK1-201ENST00000216639 KIF21AQ7Z4S6 1674 aa27.24■■□□□ 1.95
VRK1-201ENST00000216639 ABCA10Q8WWZ4 1543 aa27.23■■□□□ 1.95
VRK1-201ENST00000216639 IGF1RP08069 1367 aa27.22■■□□□ 1.95
VRK1-201ENST00000216639 RAD54L2Q9Y4B4 1467 aa27.18■■□□□ 1.94
VRK1-201ENST00000216639 CARMIL1Q5VZK9 1371 aa27.11■■□□□ 1.93
VRK1-201ENST00000216639 WDR97A6NE52 1622 aa27.07■■□□□ 1.92
VRK1-201ENST00000216639 VPS8Q8N3P4 1428 aa27.05■■□□□ 1.92
VRK1-201ENST00000216639 MRC2Q9UBG0 1479 aa27.05■■□□□ 1.92
VRK1-201ENST00000216639 PPARGC1BQ86YN6 1023 aaKnown RBP27.04■■□□□ 1.92
VRK1-201ENST00000216639 RANGAP1P46060 587 aaPredicted RBP27.01■■□□□ 1.91
VRK1-201ENST00000216639 CUL7Q14999 1698 aa27.01■■□□□ 1.91
VRK1-201ENST00000216639 HRCP23327 699 aa26.99■■□□□ 1.91
VRK1-201ENST00000216639 ABCA5Q8WWZ7 1642 aa26.96■■□□□ 1.91
VRK1-201ENST00000216639 GAPVD1Q14C86 1478 aa26.92■■□□□ 1.9
VRK1-201ENST00000216639 TARBP1Q13395 1621 aaKnown RBP26.92■■□□□ 1.9
VRK1-201ENST00000216639 TDRD9Q8NDG6 1382 aaKnown RBP26.9■■□□□ 1.9
VRK1-201ENST00000216639 APLP2Q06481 763 aa26.9■■□□□ 1.9
VRK1-201ENST00000216639 ARAP1Q96P48 1450 aa26.89■■□□□ 1.9
VRK1-201ENST00000216639 WDR62O43379 1518 aa26.88■■□□□ 1.89
VRK1-201ENST00000216639 ERCC6Q03468 1493 aa26.86■■□□□ 1.89
VRK1-201ENST00000216639 ARHGAP35Q9NRY4 1499 aa26.83■■□□□ 1.89
VRK1-201ENST00000216639 IFT140Q96RY7 1462 aa26.79■■□□□ 1.88
VRK1-201ENST00000216639 TTBK1Q5TCY1 1321 aaPredicted RBP26.78■■□□□ 1.88
VRK1-201ENST00000216639 CTTNBP2Q8WZ74 1663 aa26.74■■□□□ 1.87
VRK1-201ENST00000216639 PBRM1Q86U86 1689 aa26.72■■□□□ 1.87
VRK1-201ENST00000216639 THOC2Q8NI27 1593 aaKnown RBP26.69■■□□□ 1.86
VRK1-201ENST00000216639 EFCAB5A4FU69 1503 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms