Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 AC073347.1-201ENST00000421633 2643 ntBASIC14.87□□□□□ -0.03
SHISA3A0PJX4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 LINC02228-204ENST00000642115 2962 ntBASIC14.87□□□□□ -0.03
SHISA3A0PJX4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHISA3A0PJX4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 AC122714.2-201ENST00000502787 707 ntBASIC14.86□□□□□ -0.03
SHISA3A0PJX4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 TSPY26P-202ENST00000565928 3884 ntBASIC14.86□□□□□ -0.03
SHISA3A0PJX4 AC013268.4-201ENST00000637413 2228 ntBASIC14.86□□□□□ -0.03
SHISA3A0PJX4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHISA3A0PJX4 AC009336.1-201ENST00000608941 1553 ntBASIC14.85□□□□□ -0.03
SHISA3A0PJX4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 MIR662-201ENST00000384847 95 ntBASIC14.85□□□□□ -0.03
SHISA3A0PJX4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 HLA-J-202ENST00000469281 1241 ntBASIC14.85□□□□□ -0.03
SHISA3A0PJX4 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHISA3A0PJX4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms