RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 NISCHQ9Y2I1 1504 aa42.63■■■■■ 4.42
SSSCA1-201ENST00000309328 CCDC180Q9P1Z9 1646 aa37.74■■■■□ 3.63
SSSCA1-201ENST00000309328 ABCC9O60706 1549 aa36.44■■■■□ 3.42
SSSCA1-201ENST00000309328 ZCCHC6Q5VYS8 1495 aaKnown RBP35.61■■■■□ 3.29
SSSCA1-201ENST00000309328 MYO15BQ96JP2 1530 aa35.45■■■■□ 3.27
SSSCA1-201ENST00000309328 NACADO15069 1562 aa35.45■■■■□ 3.27
SSSCA1-201ENST00000309328 DCAF1Q9Y4B6 1507 aa35.41■■■■□ 3.26
SSSCA1-201ENST00000309328 DCAF8L2P0C7V8 631 aa35.38■■■■□ 3.25
SSSCA1-201ENST00000309328 RB1CC1Q8TDY2 1594 aa35.35■■■■□ 3.25
SSSCA1-201ENST00000309328 SCRIBQ14160 1630 aa34.34■■■■□ 3.09
SSSCA1-201ENST00000309328 UNC13AQ9UPW8 1703 aa34.3■■■■□ 3.08
SSSCA1-201ENST00000309328 BICRAQ9NZM4 1560 aa34.14■■■■□ 3.06
SSSCA1-201ENST00000309328 SHROOM4Q9ULL8 1493 aa34.11■■■■□ 3.05
SSSCA1-201ENST00000309328 PABPN1Q86U42 306 aaKnown RBP eCLIP34.1■■■■□ 3.05
SSSCA1-201ENST00000309328 EIF4G1Q04637 1599 aaKnown RBP33.27■■■□□ 2.92
SSSCA1-201ENST00000309328 BAZ1AQ9NRL2 1556 aaPredicted RBP33.06■■■□□ 2.88
SSSCA1-201ENST00000309328 CECR2Q9BXF3 1484 aa33.05■■■□□ 2.88
SSSCA1-201ENST00000309328 DNAJC5BQ9UF47 199 aa33■■■□□ 2.87
SSSCA1-201ENST00000309328 CC2D2AQ9P2K1 1620 aa32.99■■■□□ 2.87
SSSCA1-201ENST00000309328 SMARCA4P51532 1647 aa32.95■■■□□ 2.87
SSSCA1-201ENST00000309328 MROH2BQ7Z745 1585 aa32.78■■■□□ 2.84
SSSCA1-201ENST00000309328 SMARCA2P51531 1590 aa32.77■■■□□ 2.84
SSSCA1-201ENST00000309328 ATAD2BQ9ULI0 1458 aa32.72■■■□□ 2.83
SSSCA1-201ENST00000309328 PEG3Q9GZU2 1588 aa32.71■■■□□ 2.83
SSSCA1-201ENST00000309328 NCAPD3P42695 1498 aa32.7■■■□□ 2.83
SSSCA1-201ENST00000309328 RSF1Q96T23 1441 aaPredicted RBP32.62■■■□□ 2.81
SSSCA1-201ENST00000309328 HMGXB3Q12766 1538 aa32.57■■■□□ 2.8
SSSCA1-201ENST00000309328 BAZ1BQ9UIG0 1483 aaKnown RBP32.49■■■□□ 2.79
SSSCA1-201ENST00000309328 WIZO95785 1651 aa32.38■■■□□ 2.77
SSSCA1-201ENST00000309328 TOP2AP11388 1531 aaKnown RBP32.21■■■□□ 2.75
SSSCA1-201ENST00000309328 SUPT5HO00267 1087 aaKnown RBP32.02■■■□□ 2.72
SSSCA1-201ENST00000309328 CCDC88BA6NC98 1476 aa31.78■■■□□ 2.68
SSSCA1-201ENST00000309328 CADPSQ9ULU8 1353 aa31.76■■■□□ 2.67
SSSCA1-201ENST00000309328 LAMC3Q9Y6N6 1575 aa31.75■■■□□ 2.67
SSSCA1-201ENST00000309328 CFTRP13569 1480 aa31.65■■■□□ 2.66
SSSCA1-201ENST00000309328 NESP48681 1621 aa31.6■■■□□ 2.65
SSSCA1-201ENST00000309328 PDS5BQ9NTI5 1447 aa31.58■■■□□ 2.65
SSSCA1-201ENST00000309328 ERCC6Q03468 1493 aa31.48■■■□□ 2.63
SSSCA1-201ENST00000309328 FANCD2Q9BXW9 1451 aa31.35■■■□□ 2.61
SSSCA1-201ENST00000309328 PRDM2Q13029 1718 aa31.31■■■□□ 2.6
SSSCA1-201ENST00000309328 CEP164Q9UPV0 1460 aa31.3■■■□□ 2.6
SSSCA1-201ENST00000309328 KIF21AQ7Z4S6 1674 aa31.22■■■□□ 2.59
SSSCA1-201ENST00000309328 MRC2Q9UBG0 1479 aa31.17■■■□□ 2.58
SSSCA1-201ENST00000309328 THOC2Q8NI27 1593 aaKnown RBP31.09■■■□□ 2.57
SSSCA1-201ENST00000309328 CUX2O14529 1486 aa31.07■■■□□ 2.56
SSSCA1-201ENST00000309328 ABCC8Q09428 1581 aa31.05■■■□□ 2.56
SSSCA1-201ENST00000309328 WDR62O43379 1518 aa31.03■■■□□ 2.56
SSSCA1-201ENST00000309328 URB2Q14146 1524 aaKnown RBP30.95■■■□□ 2.55
SSSCA1-201ENST00000309328 DNMBPQ6XZF7 1577 aa30.89■■■□□ 2.54
SSSCA1-201ENST00000309328 TOPBP1Q92547 1522 aa30.88■■■□□ 2.53
SSSCA1-201ENST00000309328 WRNQ14191 1432 aaPredicted RBP eCLIP30.79■■■□□ 2.52
SSSCA1-201ENST00000309328 CUX1P39880 1505 aa30.75■■■□□ 2.51
SSSCA1-201ENST00000309328 IFT140Q96RY7 1462 aa30.66■■■□□ 2.5
SSSCA1-201ENST00000309328 POLA1P09884 1462 aaPredicted RBP30.64■■■□□ 2.5
SSSCA1-201ENST00000309328 TOP2BQ02880 1626 aa30.63■■■□□ 2.49
SSSCA1-201ENST00000309328 FGD5Q6ZNL6 1462 aa30.61■■■□□ 2.49
SSSCA1-201ENST00000309328 BIVM-ERCC5R4GMW8 1640 aa30.6■■■□□ 2.49
SSSCA1-201ENST00000309328 SYNJ1O43426 1573 aa30.56■■■□□ 2.48
SSSCA1-201ENST00000309328 SOGA1O94964 1423 aa30.55■■■□□ 2.48
SSSCA1-201ENST00000309328 TARBP1Q13395 1621 aaKnown RBP30.46■■■□□ 2.47
SSSCA1-201ENST00000309328 WDR97A6NE52 1622 aa30.43■■■□□ 2.46
SSSCA1-201ENST00000309328 RAD54L2Q9Y4B4 1467 aa30.43■■■□□ 2.46
SSSCA1-201ENST00000309328 ABCA10Q8WWZ4 1543 aa30.4■■■□□ 2.46
SSSCA1-201ENST00000309328 TRIM41Q8WV44 630 aa30.34■■■□□ 2.45
SSSCA1-201ENST00000309328 ZNF608Q9ULD9 1512 aaPredicted RBP30.33■■■□□ 2.45
SSSCA1-201ENST00000309328 EIF4G3O43432 1585 aaKnown RBP30.27■■■□□ 2.44
SSSCA1-201ENST00000309328 TDRD9Q8NDG6 1382 aaKnown RBP30.27■■■□□ 2.44
SSSCA1-201ENST00000309328 AQRO60306 1485 aaKnown RBP eCLIP30.25■■■□□ 2.434e-6■■■■■ 31
SSSCA1-201ENST00000309328 GAPVD1Q14C86 1478 aa30.21■■■□□ 2.43
SSSCA1-201ENST00000309328 GRIN2BQ13224 1484 aa30.19■■■□□ 2.42
SSSCA1-201ENST00000309328 ABCA5Q8WWZ7 1642 aa30.17■■■□□ 2.42
SSSCA1-201ENST00000309328 KIF27Q86VH2 1401 aa30.16■■■□□ 2.42
SSSCA1-201ENST00000309328 CHIC1Q5VXU3 224 aa30.15■■■□□ 2.42
SSSCA1-201ENST00000309328 MAGI1Q96QZ7 1491 aaPredicted RBP30.09■■■□□ 2.41
SSSCA1-201ENST00000309328 ERICH3Q5RHP9 1530 aa30.06■■■□□ 2.4
SSSCA1-201ENST00000309328 SNAPC4Q5SXM2 1469 aa30.01■■■□□ 2.4
SSSCA1-201ENST00000309328 PBRM1Q86U86 1689 aa29.99■■■□□ 2.39
SSSCA1-201ENST00000309328 DNAJC5Q9H3Z4 198 aa29.95■■■□□ 2.39
SSSCA1-201ENST00000309328 SYNJ2O15056 1496 aa29.93■■■□□ 2.38
SSSCA1-201ENST00000309328 IGF1RP08069 1367 aa29.92■■■□□ 2.38
SSSCA1-201ENST00000309328 FHAD1B1AJZ9 1412 aa29.92■■■□□ 2.38
SSSCA1-201ENST00000309328 EEA1Q15075 1411 aa29.92■■■□□ 2.38
SSSCA1-201ENST00000309328 CHMP7Q8WUX9 453 aaPredicted RBP29.89■■■□□ 2.38
SSSCA1-201ENST00000309328 ADAMTS12P58397 1594 aa29.86■■■□□ 2.37
SSSCA1-201ENST00000309328 CUL7Q14999 1698 aa29.83■■■□□ 2.37
SSSCA1-201ENST00000309328 FBLN2P98095 1184 aa29.83■■■□□ 2.37
SSSCA1-201ENST00000309328 OSCARQ8IYS5 282 aa29.83■■■□□ 2.37
SSSCA1-201ENST00000309328 CARMIL1Q5VZK9 1371 aa29.78■■■□□ 2.36
SSSCA1-201ENST00000309328 RUSC2Q8N2Y8 1516 aa29.77■■■□□ 2.36
SSSCA1-201ENST00000309328 GRIN2AQ12879 1464 aa29.76■■■□□ 2.35
SSSCA1-201ENST00000309328 CHD1O14646 1710 aa29.72■■■□□ 2.35
SSSCA1-201ENST00000309328 CSRNP3Q8WYN3 585 aa29.71■■■□□ 2.35
SSSCA1-201ENST00000309328 RAPGEF2Q9Y4G8 1499 aa29.66■■■□□ 2.34
SSSCA1-201ENST00000309328 NUP160Q12769 1436 aa29.63■■■□□ 2.33
SSSCA1-201ENST00000309328 PRXQ9BXM0 1461 aa29.63■■■□□ 2.33
SSSCA1-201ENST00000309328 FAM9AQ8IZU1 332 aaPredicted RBP29.53■■■□□ 2.32
SSSCA1-201ENST00000309328 CLASP1Q7Z460 1538 aa29.52■■■□□ 2.32
SSSCA1-201ENST00000309328 CEP170Q5SW79 1584 aa29.51■■■□□ 2.31
SSSCA1-201ENST00000309328 KIAA0586Q9BVV6 1533 aa29.46■■■□□ 2.31
SSSCA1-201ENST00000309328 KIF21BO75037 1637 aa29.44■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms