Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.36■□□□□ 0.21
PIF1Q9H611 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.36■□□□□ 0.21
PIF1Q9H611 AL359075.1-203ENST00000462729 1002 ntBASIC16.36■□□□□ 0.21
PIF1Q9H611 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.36■□□□□ 0.21
PIF1Q9H611 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.36■□□□□ 0.21
PIF1Q9H611 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.36■□□□□ 0.21
PIF1Q9H611 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.36■□□□□ 0.21
PIF1Q9H611 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.36■□□□□ 0.21
PIF1Q9H611 AC005332.3-201ENST00000589904 676 ntBASIC16.36■□□□□ 0.21
PIF1Q9H611 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.36■□□□□ 0.21
PIF1Q9H611 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.36■□□□□ 0.21
PIF1Q9H611 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PIF1Q9H611 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PIF1Q9H611 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PIF1Q9H611 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PIF1Q9H611 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.35■□□□□ 0.21
PIF1Q9H611 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.35■□□□□ 0.21
PIF1Q9H611 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
PIF1Q9H611 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.35■□□□□ 0.21
PIF1Q9H611 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.35■□□□□ 0.21
PIF1Q9H611 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.35■□□□□ 0.21
PIF1Q9H611 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.35■□□□□ 0.21
PIF1Q9H611 IGHV3-52-201ENST00000519770 353 ntBASIC16.35■□□□□ 0.21
PIF1Q9H611 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.35■□□□□ 0.21
PIF1Q9H611 AC019129.2-201ENST00000609837 1235 ntBASIC16.35■□□□□ 0.21
PIF1Q9H611 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.35■□□□□ 0.21
PIF1Q9H611 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.35■□□□□ 0.21
PIF1Q9H611 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.35■□□□□ 0.21
PIF1Q9H611 LINC00554-201ENST00000564841 3011 ntBASIC16.35■□□□□ 0.21
PIF1Q9H611 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PIF1Q9H611 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.35■□□□□ 0.21
PIF1Q9H611 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.35■□□□□ 0.21
PIF1Q9H611 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PIF1Q9H611 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.35■□□□□ 0.21
PIF1Q9H611 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.35■□□□□ 0.21
PIF1Q9H611 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.35■□□□□ 0.21
PIF1Q9H611 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.35■□□□□ 0.21
PIF1Q9H611 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PIF1Q9H611 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
PIF1Q9H611 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PIF1Q9H611 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PIF1Q9H611 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PIF1Q9H611 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
PIF1Q9H611 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.34■□□□□ 0.21
PIF1Q9H611 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PIF1Q9H611 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PIF1Q9H611 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms