Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC093525.9-201ENST00000624961 1746 ntBASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 AL356309.3-201ENST00000624132 1934 ntBASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 AC005104.2-201ENST00000427818 678 ntBASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 KRT8P47-201ENST00000604727 1398 ntBASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 AC105917.1-201ENST00000506637 2539 ntBASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
ZNF540Q8NDQ6 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 AL136038.3-201ENST00000561909 1096 ntBASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ZNF540Q8NDQ6 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 VENTXP5-201ENST00000523979 775 ntBASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.85■□□□□ 0.13
ZNF540Q8NDQ6 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms