RNA–Protein interactions for RNA: ENST00000628515.2

NRXN1-229, Transcript of neurexin 1, humanhuman

TSL 5 BASIC

Gene NRXN1, Length 3,243 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NRXN1-229ENST00000628515 NISCHQ9Y2I1 1504 aa32.27■■■□□ 2.76
NRXN1-229ENST00000628515 DCAF8L2P0C7V8 631 aa28.05■■■□□ 2.08
NRXN1-229ENST00000628515 SHROOM4Q9ULL8 1493 aa27.9■■■□□ 2.06
NRXN1-229ENST00000628515 SUPT5HO00267 1087 aaKnown RBP27.59■■■□□ 2.01
NRXN1-229ENST00000628515 CCDC180Q9P1Z9 1646 aa27.37■■□□□ 1.97
NRXN1-229ENST00000628515 ZCCHC6Q5VYS8 1495 aaKnown RBP27.07■■□□□ 1.92
NRXN1-229ENST00000628515 HRCP23327 699 aa26.86■■□□□ 1.89
NRXN1-229ENST00000628515 ABCC9O60706 1549 aa26.8■■□□□ 1.88
NRXN1-229ENST00000628515 PCGF6Q9BYE7 350 aa26.79■■□□□ 1.88
NRXN1-229ENST00000628515 CHIC1Q5VXU3 224 aa26.7■■□□□ 1.87
NRXN1-229ENST00000628515 MYO15BQ96JP2 1530 aa26.7■■□□□ 1.86
NRXN1-229ENST00000628515 PPARGC1BQ86YN6 1023 aaKnown RBP26.59■■□□□ 1.85
NRXN1-229ENST00000628515 LOC105371045A0A1W2PR82 267 aa26.24■■□□□ 1.79
NRXN1-229ENST00000628515 SCRIBQ14160 1630 aa26.18■■□□□ 1.78
NRXN1-229ENST00000628515 DCAF1Q9Y4B6 1507 aa26.07■■□□□ 1.76
NRXN1-229ENST00000628515 TRIM26Q12899 539 aaPredicted RBP25.82■■□□□ 1.72
NRXN1-229ENST00000628515 PABPN1Q86U42 306 aaKnown RBP eCLIP25.75■■□□□ 1.71
NRXN1-229ENST00000628515 EHMT2Q96KQ7 1210 aa25.69■■□□□ 1.7
NRXN1-229ENST00000628515 NACADO15069 1562 aa25.65■■□□□ 1.7
NRXN1-229ENST00000628515 FAM9AQ8IZU1 332 aaPredicted RBP25.61■■□□□ 1.69
NRXN1-229ENST00000628515 CECR2Q9BXF3 1484 aa25.52■■□□□ 1.68
NRXN1-229ENST00000628515 RB1CC1Q8TDY2 1594 aa25.49■■□□□ 1.67
NRXN1-229ENST00000628515 RSF1Q96T23 1441 aaPredicted RBP25.43■■□□□ 1.66
NRXN1-229ENST00000628515 TRIM41Q8WV44 630 aa25.42■■□□□ 1.66
NRXN1-229ENST00000628515 ZEB1P37275 1124 aaPredicted RBP25.38■■□□□ 1.65
NRXN1-229ENST00000628515 SCAF1Q9H7N4 1312 aaKnown RBP25.25■■□□□ 1.63
NRXN1-229ENST00000628515 MROH2BQ7Z745 1585 aa25.23■■□□□ 1.63
NRXN1-229ENST00000628515 PELP1Q8IZL8 1130 aaKnown RBP25.14■■□□□ 1.61
NRXN1-229ENST00000628515 WIZO95785 1651 aa25.05■■□□□ 1.6
NRXN1-229ENST00000628515 UNC13AQ9UPW8 1703 aa25.03■■□□□ 1.6
NRXN1-229ENST00000628515 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.99■■□□□ 1.59
NRXN1-229ENST00000628515 TTBK1Q5TCY1 1321 aaPredicted RBP24.96■■□□□ 1.59
NRXN1-229ENST00000628515 CCER1Q8TC90 406 aaPredicted RBP24.93■■□□□ 1.58
NRXN1-229ENST00000628515 BICRAQ9NZM4 1560 aa24.83■■□□□ 1.56
NRXN1-229ENST00000628515 BAZ1AQ9NRL2 1556 aaPredicted RBP24.79■■□□□ 1.56
NRXN1-229ENST00000628515 NEUROD1Q13562 356 aa24.76■■□□□ 1.55
NRXN1-229ENST00000628515 ACIN1Q9UKV3 1341 aaKnown RBP24.73■■□□□ 1.55
NRXN1-229ENST00000628515 SMARCA4P51532 1647 aa24.68■■□□□ 1.54
NRXN1-229ENST00000628515 DIEXFQ68CQ4 756 aaKnown RBP24.64■■□□□ 1.54
NRXN1-229ENST00000628515 GTF3C3Q9Y5Q9 886 aa24.64■■□□□ 1.54
NRXN1-229ENST00000628515 CENPBP07199 599 aaPredicted RBP24.56■■□□□ 1.52
NRXN1-229ENST00000628515 CCDC88BA6NC98 1476 aa24.54■■□□□ 1.52
NRXN1-229ENST00000628515 YTHDC1Q96MU7 727 aaKnown RBP24.47■■□□□ 1.51
NRXN1-229ENST00000628515 TOP2AP11388 1531 aaKnown RBP24.42■■□□□ 1.5
NRXN1-229ENST00000628515 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
NRXN1-229ENST00000628515 SMARCA2P51531 1590 aa24.34■■□□□ 1.49
NRXN1-229ENST00000628515 ATAD2BQ9ULI0 1458 aa24.34■■□□□ 1.49
NRXN1-229ENST00000628515 BAZ1BQ9UIG0 1483 aaKnown RBP24.32■■□□□ 1.48
NRXN1-229ENST00000628515 UBTFP17480 764 aaKnown RBP24.27■■□□□ 1.48
NRXN1-229ENST00000628515 RANGAP1P46060 587 aaPredicted RBP24.21■■□□□ 1.47
NRXN1-229ENST00000628515 ZNF316A6NFI3 1004 aaPredicted RBP24.2■■□□□ 1.46
NRXN1-229ENST00000628515 HNRNPUL2Q1KMD3 747 aaKnown RBP24.16■■□□□ 1.46
NRXN1-229ENST00000628515 CEP162Q5TB80 1403 aa24.16■■□□□ 1.46
NRXN1-229ENST00000628515 EIF4G1Q04637 1599 aaKnown RBP24.15■■□□□ 1.46
NRXN1-229ENST00000628515 SOGA1O94964 1423 aa24.09■■□□□ 1.45
NRXN1-229ENST00000628515 MIER1Q8N108 512 aa24.06■■□□□ 1.44
NRXN1-229ENST00000628515 MYT1Q01538 1121 aa24.05■■□□□ 1.44
NRXN1-229ENST00000628515 RUSC2Q8N2Y8 1516 aa24.03■■□□□ 1.44
NRXN1-229ENST00000628515 CSRNP3Q8WYN3 585 aa24■■□□□ 1.43
NRXN1-229ENST00000628515 DNAJC5BQ9UF47 199 aa24■■□□□ 1.43
NRXN1-229ENST00000628515 WRNQ14191 1432 aaPredicted RBP eCLIP23.98■■□□□ 1.43
NRXN1-229ENST00000628515 PEG3Q9GZU2 1588 aa23.95■■□□□ 1.42
NRXN1-229ENST00000628515 TNIKQ9UKE5 1360 aa23.93■■□□□ 1.42
NRXN1-229ENST00000628515 NCAPD3P42695 1498 aa23.84■■□□□ 1.41
NRXN1-229ENST00000628515 APLP2Q06481 763 aa23.82■■□□□ 1.4
NRXN1-229ENST00000628515 CC2D2AQ9P2K1 1620 aa23.79■■□□□ 1.4
NRXN1-229ENST00000628515 SYNJ1O43426 1573 aa23.79■■□□□ 1.4
NRXN1-229ENST00000628515 GOLGA3Q08378 1498 aa23.72■■□□□ 1.39
NRXN1-229ENST00000628515 EEA1Q15075 1411 aa23.65■■□□□ 1.38
NRXN1-229ENST00000628515 HMGXB3Q12766 1538 aa23.64■■□□□ 1.37
NRXN1-229ENST00000628515 CLIP1P30622 1438 aa23.62■■□□□ 1.37
NRXN1-229ENST00000628515 NESP48681 1621 aa23.61■■□□□ 1.37
NRXN1-229ENST00000628515 CADPSQ9ULU8 1353 aa23.54■■□□□ 1.36
NRXN1-229ENST00000628515 CFTRP13569 1480 aa23.52■■□□□ 1.35
NRXN1-229ENST00000628515 CEP164Q9UPV0 1460 aa23.49■■□□□ 1.35
NRXN1-229ENST00000628515 CUX1P39880 1505 aa23.47■■□□□ 1.35
NRXN1-229ENST00000628515 VPS8Q8N3P4 1428 aa23.45■■□□□ 1.34
NRXN1-229ENST00000628515 SUPT16HQ9Y5B9 1047 aaKnown RBP23.45■■□□□ 1.34
NRXN1-229ENST00000628515 RAPGEF2Q9Y4G8 1499 aa23.45■■□□□ 1.34
NRXN1-229ENST00000628515 ITGAEP38570 1179 aa23.45■■□□□ 1.34
NRXN1-229ENST00000628515 TOP2BQ02880 1626 aa23.36■■□□□ 1.33
NRXN1-229ENST00000628515 FANCD2Q9BXW9 1451 aa23.34■■□□□ 1.33
NRXN1-229ENST00000628515 BCANQ96GW7 911 aa23.34■■□□□ 1.33
NRXN1-229ENST00000628515 P3H3Q8IVL6 736 aa23.33■■□□□ 1.33
NRXN1-229ENST00000628515 CUX2O14529 1486 aa23.32■■□□□ 1.32
NRXN1-229ENST00000628515 DHX57Q6P158 1386 aaKnown RBP23.31■■□□□ 1.32
NRXN1-229ENST00000628515 KANK4Q5T7N3 995 aaPredicted RBP23.3■■□□□ 1.32
NRXN1-229ENST00000628515 ATP1B4Q9UN42 357 aaPredicted RBP23.28■■□□□ 1.32
NRXN1-229ENST00000628515 RAD54L2Q9Y4B4 1467 aa23.27■■□□□ 1.32
NRXN1-229ENST00000628515 KCNH8Q96L42 1107 aa23.27■■□□□ 1.32
NRXN1-229ENST00000628515 KIF21BO75037 1637 aa23.26■■□□□ 1.31
NRXN1-229ENST00000628515 KIF27Q86VH2 1401 aa23.25■■□□□ 1.31
NRXN1-229ENST00000628515 FGD5Q6ZNL6 1462 aa23.25■■□□□ 1.31
NRXN1-229ENST00000628515 TSHZ2Q9NRE2 1034 aa23.22■■□□□ 1.31
NRXN1-229ENST00000628515 TDRD9Q8NDG6 1382 aaKnown RBP23.17■■□□□ 1.3
NRXN1-229ENST00000628515 BIVM-ERCC5R4GMW8 1640 aa23.17■■□□□ 1.3
NRXN1-229ENST00000628515 CLSPNQ9HAW4 1339 aa23.16■■□□□ 1.3
NRXN1-229ENST00000628515 BCL11AQ9H165 835 aa23.13■■□□□ 1.29
NRXN1-229ENST00000628515 IGF1RP08069 1367 aa23.11■■□□□ 1.29
NRXN1-229ENST00000628515 FKBP8Q14318 412 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms