Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PPP4R4Q6NUP7 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 AC024563.2-201ENST00000603282 481 ntBASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 AC069148.1-201ENST00000608741 768 ntBASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.4■□□□□ 0.22
PPP4R4Q6NUP7 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PPP4R4Q6NUP7 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
PPP4R4Q6NUP7 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PPP4R4Q6NUP7 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 AC105917.1-201ENST00000506637 2539 ntBASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PPP4R4Q6NUP7 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 LINC00167-201ENST00000530583 1419 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms