RNA–Protein interactions for RNA: ENST00000539925.5

LTBR-207, Transcript of lymphotoxin beta receptor, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LTBR, Length 1,665 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-207ENST00000539925 NISCHQ9Y2I1 1504 aa38.25■■■■□ 3.71
LTBR-207ENST00000539925 CCDC180Q9P1Z9 1646 aa33.3■■■□□ 2.92
LTBR-207ENST00000539925 ZCCHC6Q5VYS8 1495 aaKnown RBP32.19■■■□□ 2.74
LTBR-207ENST00000539925 DCAF1Q9Y4B6 1507 aa31.76■■■□□ 2.68
LTBR-207ENST00000539925 DCAF8L2P0C7V8 631 aa31.39■■■□□ 2.62
LTBR-207ENST00000539925 MYO15BQ96JP2 1530 aa31.34■■■□□ 2.61
LTBR-207ENST00000539925 SHROOM4Q9ULL8 1493 aa31.16■■■□□ 2.58
LTBR-207ENST00000539925 ABCC9O60706 1549 aa31.12■■■□□ 2.57
LTBR-207ENST00000539925 NACADO15069 1562 aa31■■■□□ 2.55
LTBR-207ENST00000539925 RB1CC1Q8TDY2 1594 aa30.65■■■□□ 2.5
LTBR-207ENST00000539925 SCRIBQ14160 1630 aa30.48■■■□□ 2.47
LTBR-207ENST00000539925 SUPT5HO00267 1087 aaKnown RBP30.17■■■□□ 2.42
LTBR-207ENST00000539925 UNC13AQ9UPW8 1703 aa29.82■■■□□ 2.36
LTBR-207ENST00000539925 RSF1Q96T23 1441 aaPredicted RBP29.74■■■□□ 2.35
LTBR-207ENST00000539925 BICRAQ9NZM4 1560 aa29.58■■■□□ 2.33
LTBR-207ENST00000539925 CECR2Q9BXF3 1484 aa29.58■■■□□ 2.33
LTBR-207ENST00000539925 BAZ1AQ9NRL2 1556 aaPredicted RBP29.57■■■□□ 2.32
LTBR-207ENST00000539925 MROH2BQ7Z745 1585 aa29.47■■■□□ 2.31
LTBR-207ENST00000539925 PABPN1Q86U42 306 aaKnown RBP eCLIP29.36■■■□□ 2.29
LTBR-207ENST00000539925 SMARCA4P51532 1647 aa29.32■■■□□ 2.28
LTBR-207ENST00000539925 WIZO95785 1651 aa29.2■■■□□ 2.26
LTBR-207ENST00000539925 CHIC1Q5VXU3 224 aa29.06■■■□□ 2.24
LTBR-207ENST00000539925 TOP2AP11388 1531 aaKnown RBP29.05■■■□□ 2.24
LTBR-207ENST00000539925 PEG3Q9GZU2 1588 aa29.04■■■□□ 2.24
LTBR-207ENST00000539925 SMARCA2P51531 1590 aa28.88■■■□□ 2.21
LTBR-207ENST00000539925 ATAD2BQ9ULI0 1458 aa28.81■■■□□ 2.2
LTBR-207ENST00000539925 EIF4G1Q04637 1599 aaKnown RBP28.72■■■□□ 2.19
LTBR-207ENST00000539925 CCDC88BA6NC98 1476 aa28.69■■■□□ 2.18
LTBR-207ENST00000539925 BAZ1BQ9UIG0 1483 aaKnown RBP28.68■■■□□ 2.18
LTBR-207ENST00000539925 NCAPD3P42695 1498 aa28.6■■■□□ 2.17
LTBR-207ENST00000539925 HMGXB3Q12766 1538 aa28.57■■■□□ 2.16
LTBR-207ENST00000539925 TRIM41Q8WV44 630 aa28.47■■■□□ 2.15
LTBR-207ENST00000539925 CC2D2AQ9P2K1 1620 aa28.2■■■□□ 2.11
LTBR-207ENST00000539925 ABCC8Q09428 1581 aa28.06■■■□□ 2.08
LTBR-207ENST00000539925 WRNQ14191 1432 aaPredicted RBP eCLIP28.03■■■□□ 2.08
LTBR-207ENST00000539925 CFTRP13569 1480 aa27.99■■■□□ 2.07
LTBR-207ENST00000539925 EEA1Q15075 1411 aa27.9■■■□□ 2.06
LTBR-207ENST00000539925 CADPSQ9ULU8 1353 aa27.86■■■□□ 2.05
LTBR-207ENST00000539925 LOC105371045A0A1W2PR82 267 aa27.84■■■□□ 2.05
LTBR-207ENST00000539925 PRDM2Q13029 1718 aa27.81■■■□□ 2.04
LTBR-207ENST00000539925 FAM9AQ8IZU1 332 aaPredicted RBP27.78■■■□□ 2.04
LTBR-207ENST00000539925 SYNJ1O43426 1573 aa27.78■■■□□ 2.04
LTBR-207ENST00000539925 TOP2BQ02880 1626 aa27.75■■■□□ 2.03
LTBR-207ENST00000539925 BIVM-ERCC5R4GMW8 1640 aa27.71■■■□□ 2.03
LTBR-207ENST00000539925 SOGA1O94964 1423 aa27.62■■■□□ 2.01
LTBR-207ENST00000539925 CSRNP3Q8WYN3 585 aa27.59■■■□□ 2.01
LTBR-207ENST00000539925 LAMC3Q9Y6N6 1575 aa27.58■■■□□ 2
LTBR-207ENST00000539925 CUX1P39880 1505 aa27.56■■■□□ 2
LTBR-207ENST00000539925 FANCD2Q9BXW9 1451 aa27.51■■□□□ 1.99
LTBR-207ENST00000539925 RUSC2Q8N2Y8 1516 aa27.44■■□□□ 1.98
LTBR-207ENST00000539925 GOLGA3Q08378 1498 aa27.4■■□□□ 1.98
LTBR-207ENST00000539925 CEP164Q9UPV0 1460 aa27.4■■□□□ 1.98
LTBR-207ENST00000539925 PDS5BQ9NTI5 1447 aa27.4■■□□□ 1.98
LTBR-207ENST00000539925 KIF21BO75037 1637 aa27.38■■□□□ 1.97
LTBR-207ENST00000539925 TNIKQ9UKE5 1360 aa27.38■■□□□ 1.97
LTBR-207ENST00000539925 KIF27Q86VH2 1401 aa27.35■■□□□ 1.97
LTBR-207ENST00000539925 NESP48681 1621 aa27.35■■□□□ 1.97
LTBR-207ENST00000539925 DNMBPQ6XZF7 1577 aa27.32■■□□□ 1.96
LTBR-207ENST00000539925 EHMT2Q96KQ7 1210 aa27.25■■□□□ 1.95
LTBR-207ENST00000539925 FGD5Q6ZNL6 1462 aa27.25■■□□□ 1.95
LTBR-207ENST00000539925 TOPBP1Q92547 1522 aa27.23■■□□□ 1.95
LTBR-207ENST00000539925 UBTFP17480 764 aaKnown RBP27.21■■□□□ 1.95
LTBR-207ENST00000539925 DNAJC5BQ9UF47 199 aa27.21■■□□□ 1.95
LTBR-207ENST00000539925 ERICH3Q5RHP9 1530 aa27.21■■□□□ 1.95
LTBR-207ENST00000539925 PRXQ9BXM0 1461 aa27.17■■□□□ 1.94
LTBR-207ENST00000539925 CEP162Q5TB80 1403 aa27.17■■□□□ 1.94
LTBR-207ENST00000539925 CUX2O14529 1486 aa27.14■■□□□ 1.93
LTBR-207ENST00000539925 POLA1P09884 1462 aaPredicted RBP27.1■■□□□ 1.93
LTBR-207ENST00000539925 URB2Q14146 1524 aaKnown RBP27.09■■□□□ 1.93
LTBR-207ENST00000539925 RAPGEF2Q9Y4G8 1499 aa27.09■■□□□ 1.93
LTBR-207ENST00000539925 ABCA10Q8WWZ4 1543 aa27.09■■□□□ 1.93
LTBR-207ENST00000539925 KIF21AQ7Z4S6 1674 aa27.03■■□□□ 1.92
LTBR-207ENST00000539925 IGF1RP08069 1367 aa27.01■■□□□ 1.91
LTBR-207ENST00000539925 MRC2Q9UBG0 1479 aa26.97■■□□□ 1.91
LTBR-207ENST00000539925 TRIM26Q12899 539 aaPredicted RBP26.97■■□□□ 1.91
LTBR-207ENST00000539925 CLIP1P30622 1438 aa26.94■■□□□ 1.9
LTBR-207ENST00000539925 RAD54L2Q9Y4B4 1467 aa26.93■■□□□ 1.9
LTBR-207ENST00000539925 CARMIL1Q5VZK9 1371 aa26.91■■□□□ 1.9
LTBR-207ENST00000539925 WDR97A6NE52 1622 aa26.88■■□□□ 1.89
LTBR-207ENST00000539925 PCGF6Q9BYE7 350 aa26.86■■□□□ 1.89
LTBR-207ENST00000539925 CUL7Q14999 1698 aa26.83■■□□□ 1.89
LTBR-207ENST00000539925 WDR62O43379 1518 aa26.8■■□□□ 1.88
LTBR-207ENST00000539925 ABCA5Q8WWZ7 1642 aa26.79■■□□□ 1.88
LTBR-207ENST00000539925 TARBP1Q13395 1621 aaKnown RBP26.76■■□□□ 1.87
LTBR-207ENST00000539925 ERCC6Q03468 1493 aa26.76■■□□□ 1.87
LTBR-207ENST00000539925 GAPVD1Q14C86 1478 aa26.76■■□□□ 1.87
LTBR-207ENST00000539925 VPS8Q8N3P4 1428 aa26.76■■□□□ 1.87
LTBR-207ENST00000539925 IFT140Q96RY7 1462 aa26.71■■□□□ 1.87
LTBR-207ENST00000539925 TDRD9Q8NDG6 1382 aaKnown RBP26.69■■□□□ 1.86
LTBR-207ENST00000539925 THOC2Q8NI27 1593 aaKnown RBP26.59■■□□□ 1.85
LTBR-207ENST00000539925 APLP2Q06481 763 aa26.58■■□□□ 1.85
LTBR-207ENST00000539925 ARAP1Q96P48 1450 aa26.58■■□□□ 1.84
LTBR-207ENST00000539925 GRIN2BQ13224 1484 aa26.56■■□□□ 1.84
LTBR-207ENST00000539925 ARHGAP35Q9NRY4 1499 aa26.55■■□□□ 1.84
LTBR-207ENST00000539925 FHAD1B1AJZ9 1412 aa26.53■■□□□ 1.84
LTBR-207ENST00000539925 RANGAP1P46060 587 aaPredicted RBP26.51■■□□□ 1.83
LTBR-207ENST00000539925 PBRM1Q86U86 1689 aa26.5■■□□□ 1.83
LTBR-207ENST00000539925 EFCAB5A4FU69 1503 aa26.49■■□□□ 1.83
LTBR-207ENST00000539925 CTTNBP2Q8WZ74 1663 aa26.48■■□□□ 1.83
LTBR-207ENST00000539925 AQRO60306 1485 aaKnown RBP eCLIP26.46■■□□□ 1.839e-7■■■■□ 24.8
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms