Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 AL845331.1-201ENST00000424978 1190 ntBASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 CHCHD2P8-201ENST00000429873 447 ntBASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 BX276092.5-203ENST00000456199 560 ntBASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC54Q8NEL0 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 MST1L-201ENST00000442552 2185 ntBASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 AD001527.2-201ENST00000622994 785 ntBASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CCDC54Q8NEL0 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 AC068418.2-201ENST00000577309 3703 ntBASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms