Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC10.52□□□□□ -0.73
APOBP04114 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
APOBP04114 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC10.52□□□□□ -0.73
APOBP04114 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
APOBP04114 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
APOBP04114 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
APOBP04114 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
APOBP04114 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC10.52□□□□□ -0.73
APOBP04114 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC10.52□□□□□ -0.73
APOBP04114 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
APOBP04114 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC10.52□□□□□ -0.73
APOBP04114 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC10.52□□□□□ -0.73
APOBP04114 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
APOBP04114 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
APOBP04114 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
APOBP04114 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC10.52□□□□□ -0.73
APOBP04114 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
APOBP04114 AC093525.8-201ENST00000624099 1342 ntBASIC10.52□□□□□ -0.73
APOBP04114 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC10.51□□□□□ -0.73
APOBP04114 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
APOBP04114 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC10.51□□□□□ -0.73
APOBP04114 NAT9-224ENST00000583757 583 ntTSL 3 BASIC10.51□□□□□ -0.73
APOBP04114 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC10.51□□□□□ -0.73
APOBP04114 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC10.51□□□□□ -0.73
APOBP04114 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 AC010319.3-201ENST00000597028 470 ntBASIC10.51□□□□□ -0.73
APOBP04114 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 LYSMD4-203ENST00000378904 2122 ntBASIC10.51□□□□□ -0.73
APOBP04114 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
APOBP04114 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC10.51□□□□□ -0.73
APOBP04114 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
APOBP04114 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC10.51□□□□□ -0.73
APOBP04114 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC10.51□□□□□ -0.73
APOBP04114 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
APOBP04114 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
APOBP04114 TEX48-202ENST00000612244 662 ntTSL 3 BASIC10.51□□□□□ -0.73
APOBP04114 AC068587.10-201ENST00000641210 219 ntBASIC10.51□□□□□ -0.73
APOBP04114 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
APOBP04114 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC10.51□□□□□ -0.73
APOBP04114 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC10.51□□□□□ -0.73
APOBP04114 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC10.51□□□□□ -0.73
APOBP04114 PRYP6-201ENST00000514804 343 ntBASIC10.51□□□□□ -0.73
APOBP04114 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC10.51□□□□□ -0.73
APOBP04114 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC10.51□□□□□ -0.73
APOBP04114 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
APOBP04114 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 AC018665.1-201ENST00000622927 1362 ntBASIC10.5□□□□□ -0.73
APOBP04114 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC10.5□□□□□ -0.73
APOBP04114 AC087499.6-201ENST00000411576 835 ntBASIC10.5□□□□□ -0.73
APOBP04114 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 RN7SL618P-201ENST00000477850 296 ntBASIC10.5□□□□□ -0.73
APOBP04114 TPI1-206ENST00000488464 791 ntTSL 5 BASIC10.5□□□□□ -0.73
APOBP04114 AC093004.1-201ENST00000508850 424 ntBASIC10.5□□□□□ -0.73
APOBP04114 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC10.5□□□□□ -0.73
APOBP04114 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC10.5□□□□□ -0.73
APOBP04114 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 HLA-DPB2-205ENST00000435074 1188 ntBASIC10.5□□□□□ -0.73
APOBP04114 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 CD74-212ENST00000524315 584 ntTSL 5 BASIC10.5□□□□□ -0.73
APOBP04114 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC10.5□□□□□ -0.73
APOBP04114 PFAS-212ENST00000625942 396 ntTSL 5 BASIC10.5□□□□□ -0.73
APOBP04114 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms