RNA–Protein interactions for RNA: ENST00000554974.5

XRCC3-210, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 4 BASIC

Gene XRCC3, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-210ENST00000554974 NISCHQ9Y2I1 1504 aa38.07■■■■□ 3.68
XRCC3-210ENST00000554974 ABCC9O60706 1549 aa34.37■■■■□ 3.09
XRCC3-210ENST00000554974 CCDC180Q9P1Z9 1646 aa34.26■■■■□ 3.07
XRCC3-210ENST00000554974 RB1CC1Q8TDY2 1594 aa32.63■■■□□ 2.81
XRCC3-210ENST00000554974 NACADO15069 1562 aa32.36■■■□□ 2.77
XRCC3-210ENST00000554974 DNAJC5BQ9UF47 199 aa32.29■■■□□ 2.76
XRCC3-210ENST00000554974 DCAF8L2P0C7V8 631 aa32.14■■■□□ 2.74
XRCC3-210ENST00000554974 UNC13AQ9UPW8 1703 aa32■■■□□ 2.71
XRCC3-210ENST00000554974 PABPN1Q86U42 306 aaKnown RBP eCLIP31.94■■■□□ 2.7
XRCC3-210ENST00000554974 MYO15BQ96JP2 1530 aa31.83■■■□□ 2.69
XRCC3-210ENST00000554974 BICRAQ9NZM4 1560 aa31.73■■■□□ 2.67
XRCC3-210ENST00000554974 ZCCHC6Q5VYS8 1495 aaKnown RBP31.55■■■□□ 2.64
XRCC3-210ENST00000554974 DCAF1Q9Y4B6 1507 aa31.4■■■□□ 2.62
XRCC3-210ENST00000554974 SCRIBQ14160 1630 aa31.26■■■□□ 2.59
XRCC3-210ENST00000554974 SHROOM4Q9ULL8 1493 aa31.21■■■□□ 2.59
XRCC3-210ENST00000554974 CC2D2AQ9P2K1 1620 aa31.05■■■□□ 2.56
XRCC3-210ENST00000554974 EIF4G1Q04637 1599 aaKnown RBP30.95■■■□□ 2.54
XRCC3-210ENST00000554974 CECR2Q9BXF3 1484 aa30.95■■■□□ 2.54
XRCC3-210ENST00000554974 NCAPD3P42695 1498 aa29.85■■■□□ 2.37
XRCC3-210ENST00000554974 ATAD2BQ9ULI0 1458 aa29.78■■■□□ 2.36
XRCC3-210ENST00000554974 SMARCA4P51532 1647 aa29.77■■■□□ 2.36
XRCC3-210ENST00000554974 SMARCA2P51531 1590 aa29.69■■■□□ 2.34
XRCC3-210ENST00000554974 DNAJC5Q9H3Z4 198 aa29.68■■■□□ 2.34
XRCC3-210ENST00000554974 HMGXB3Q12766 1538 aa29.67■■■□□ 2.34
XRCC3-210ENST00000554974 ERCC6Q03468 1493 aa29.67■■■□□ 2.34
XRCC3-210ENST00000554974 CUX2O14529 1486 aa29.62■■■□□ 2.33
XRCC3-210ENST00000554974 BAZ1AQ9NRL2 1556 aaPredicted RBP29.56■■■□□ 2.32
XRCC3-210ENST00000554974 NESP48681 1621 aa29.51■■■□□ 2.31
XRCC3-210ENST00000554974 BAZ1BQ9UIG0 1483 aaKnown RBP29.5■■■□□ 2.31
XRCC3-210ENST00000554974 PEG3Q9GZU2 1588 aa29.44■■■□□ 2.3
XRCC3-210ENST00000554974 MROH2BQ7Z745 1585 aa29.37■■■□□ 2.29
XRCC3-210ENST00000554974 THOC2Q8NI27 1593 aaKnown RBP29.26■■■□□ 2.27
XRCC3-210ENST00000554974 LAMC3Q9Y6N6 1575 aa29.24■■■□□ 2.27
XRCC3-210ENST00000554974 KIF21AQ7Z4S6 1674 aa29.17■■■□□ 2.26
XRCC3-210ENST00000554974 WIZO95785 1651 aa29.04■■■□□ 2.24
XRCC3-210ENST00000554974 PDS5BQ9NTI5 1447 aa29.02■■■□□ 2.24
XRCC3-210ENST00000554974 CADPSQ9ULU8 1353 aa28.93■■■□□ 2.22
XRCC3-210ENST00000554974 MRC2Q9UBG0 1479 aa28.84■■■□□ 2.21
XRCC3-210ENST00000554974 WDR62O43379 1518 aa28.79■■■□□ 2.2
XRCC3-210ENST00000554974 CEP164Q9UPV0 1460 aa28.71■■■□□ 2.19
XRCC3-210ENST00000554974 RSF1Q96T23 1441 aaPredicted RBP28.68■■■□□ 2.18
XRCC3-210ENST00000554974 FANCD2Q9BXW9 1451 aa28.66■■■□□ 2.18
XRCC3-210ENST00000554974 TOP2AP11388 1531 aaKnown RBP28.64■■■□□ 2.17
XRCC3-210ENST00000554974 CFTRP13569 1480 aa28.6■■■□□ 2.17
XRCC3-210ENST00000554974 URB2Q14146 1524 aaKnown RBP28.45■■■□□ 2.15
XRCC3-210ENST00000554974 PRDM2Q13029 1718 aa28.4■■■□□ 2.14
XRCC3-210ENST00000554974 TRIM41Q8WV44 630 aa28.4■■■□□ 2.14
XRCC3-210ENST00000554974 CCDC88BA6NC98 1476 aa28.27■■■□□ 2.12
XRCC3-210ENST00000554974 OSCARQ8IYS5 282 aa28.18■■■□□ 2.1
XRCC3-210ENST00000554974 ZNF608Q9ULD9 1512 aaPredicted RBP28.13■■■□□ 2.09
XRCC3-210ENST00000554974 TOPBP1Q92547 1522 aa28.11■■■□□ 2.09
XRCC3-210ENST00000554974 IFT140Q96RY7 1462 aa28.1■■■□□ 2.09
XRCC3-210ENST00000554974 EIF4G3O43432 1585 aaKnown RBP28.01■■■□□ 2.07
XRCC3-210ENST00000554974 DNMBPQ6XZF7 1577 aa28.01■■■□□ 2.07
XRCC3-210ENST00000554974 RIMBP3CA6NJZ7 1639 aa27.96■■■□□ 2.07
XRCC3-210ENST00000554974 RIMBP3BA6NNM3 1639 aa27.96■■■□□ 2.07
XRCC3-210ENST00000554974 RIMBP3Q9UFD9 1639 aa27.96■■■□□ 2.07
XRCC3-210ENST00000554974 ABCC8Q09428 1581 aa27.96■■■□□ 2.07
XRCC3-210ENST00000554974 TARBP1Q13395 1621 aaKnown RBP27.89■■■□□ 2.06
XRCC3-210ENST00000554974 ARHGEF11O15085 1522 aa27.84■■■□□ 2.05
XRCC3-210ENST00000554974 CHD1O14646 1710 aa27.84■■■□□ 2.05
XRCC3-210ENST00000554974 AQRO60306 1485 aaKnown RBP eCLIP27.83■■■□□ 2.046e-6■■■■□ 25.1
XRCC3-210ENST00000554974 POLA1P09884 1462 aaPredicted RBP27.82■■■□□ 2.04
XRCC3-210ENST00000554974 RAD54L2Q9Y4B4 1467 aa27.72■■■□□ 2.03
XRCC3-210ENST00000554974 SOGA1O94964 1423 aa27.64■■■□□ 2.02
XRCC3-210ENST00000554974 FGD5Q6ZNL6 1462 aa27.64■■■□□ 2.01
XRCC3-210ENST00000554974 FBLN2P98095 1184 aa27.63■■■□□ 2.01
XRCC3-210ENST00000554974 TDRD9Q8NDG6 1382 aaKnown RBP27.62■■■□□ 2.01
XRCC3-210ENST00000554974 CUX1P39880 1505 aa27.61■■■□□ 2.01
XRCC3-210ENST00000554974 SNAPC4Q5SXM2 1469 aa27.57■■■□□ 2
XRCC3-210ENST00000554974 CYB5RLQ6IPT4 315 aa27.57■■■□□ 2
XRCC3-210ENST00000554974 ARAP1Q96P48 1450 aa27.57■■■□□ 2
XRCC3-210ENST00000554974 WDR97A6NE52 1622 aa27.55■■■□□ 2
XRCC3-210ENST00000554974 CLASP1Q7Z460 1538 aa27.46■■□□□ 1.99
XRCC3-210ENST00000554974 MAGI1Q96QZ7 1491 aaPredicted RBP27.44■■□□□ 1.98
XRCC3-210ENST00000554974 GRIN2BQ13224 1484 aa27.43■■□□□ 1.98
XRCC3-210ENST00000554974 PBRM1Q86U86 1689 aa27.42■■□□□ 1.98
XRCC3-210ENST00000554974 SYNJ1O43426 1573 aa27.41■■□□□ 1.98
XRCC3-210ENST00000554974 CHMP7Q8WUX9 453 aaPredicted RBP27.37■■□□□ 1.97
XRCC3-210ENST00000554974 SYNJ2O15056 1496 aa27.37■■□□□ 1.97
XRCC3-210ENST00000554974 GAPVD1Q14C86 1478 aa27.32■■□□□ 1.96
XRCC3-210ENST00000554974 ABCA5Q8WWZ7 1642 aa27.32■■□□□ 1.96
XRCC3-210ENST00000554974 TRHP20396 242 aaPredicted RBP27.31■■□□□ 1.96
XRCC3-210ENST00000554974 SUPT5HO00267 1087 aaKnown RBP27.3■■□□□ 1.96
XRCC3-210ENST00000554974 ABCA10Q8WWZ4 1543 aa27.28■■□□□ 1.96
XRCC3-210ENST00000554974 BIVM-ERCC5R4GMW8 1640 aa27.14■■□□□ 1.94
XRCC3-210ENST00000554974 ADAMTS12P58397 1594 aa27.13■■□□□ 1.93
XRCC3-210ENST00000554974 WRNQ14191 1432 aaPredicted RBP eCLIP27.12■■□□□ 1.93
XRCC3-210ENST00000554974 TOP2BQ02880 1626 aa27.12■■□□□ 1.93
XRCC3-210ENST00000554974 GRIN2AQ12879 1464 aa27.11■■□□□ 1.93
XRCC3-210ENST00000554974 ERCC6L2Q5T890 1561 aa27.07■■□□□ 1.92
XRCC3-210ENST00000554974 CEP170Q5SW79 1584 aa27.05■■□□□ 1.92
XRCC3-210ENST00000554974 NUP160Q12769 1436 aa27■■□□□ 1.91
XRCC3-210ENST00000554974 FHAD1B1AJZ9 1412 aa26.95■■□□□ 1.9
XRCC3-210ENST00000554974 ERICH3Q5RHP9 1530 aa26.94■■□□□ 1.9
XRCC3-210ENST00000554974 SHROOM2Q13796 1616 aa26.94■■□□□ 1.9
XRCC3-210ENST00000554974 RUSC2Q8N2Y8 1516 aa26.76■■□□□ 1.87
XRCC3-210ENST00000554974 PRG4Q92954 1404 aaPredicted RBP26.74■■□□□ 1.87
XRCC3-210ENST00000554974 KIF13AQ9H1H9 1805 aa26.67■■□□□ 1.86
XRCC3-210ENST00000554974 JPH4Q96JJ6 628 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms