RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 NISCHQ9Y2I1 1504 aa37.85■■■■□ 3.65
SYNE2-228ENST00000639659 ABCC9O60706 1549 aa34.44■■■■□ 3.1
SYNE2-228ENST00000639659 CCDC180Q9P1Z9 1646 aa34.08■■■■□ 3.05
SYNE2-228ENST00000639659 RB1CC1Q8TDY2 1594 aa32.59■■■□□ 2.81
SYNE2-228ENST00000639659 DNAJC5BQ9UF47 199 aa32.43■■■□□ 2.78
SYNE2-228ENST00000639659 DCAF8L2P0C7V8 631 aa32.26■■■□□ 2.75
SYNE2-228ENST00000639659 NACADO15069 1562 aa32.25■■■□□ 2.75
SYNE2-228ENST00000639659 PABPN1Q86U42 306 aaKnown RBP eCLIP32.03■■■□□ 2.72
SYNE2-228ENST00000639659 UNC13AQ9UPW8 1703 aa31.88■■■□□ 2.69
SYNE2-228ENST00000639659 MYO15BQ96JP2 1530 aa31.62■■■□□ 2.65
SYNE2-228ENST00000639659 BICRAQ9NZM4 1560 aa31.61■■■□□ 2.65
SYNE2-228ENST00000639659 ZCCHC6Q5VYS8 1495 aaKnown RBP31.32■■■□□ 2.6
SYNE2-228ENST00000639659 SCRIBQ14160 1630 aa31.17■■■□□ 2.58
SYNE2-228ENST00000639659 DCAF1Q9Y4B6 1507 aa31.15■■■□□ 2.58
SYNE2-228ENST00000639659 SHROOM4Q9ULL8 1493 aa31.08■■■□□ 2.57
SYNE2-228ENST00000639659 CC2D2AQ9P2K1 1620 aa31.05■■■□□ 2.56
SYNE2-228ENST00000639659 CECR2Q9BXF3 1484 aa31■■■□□ 2.55
SYNE2-228ENST00000639659 EIF4G1Q04637 1599 aaKnown RBP30.89■■■□□ 2.54
SYNE2-228ENST00000639659 DNAJC5Q9H3Z4 198 aa29.92■■■□□ 2.38
SYNE2-228ENST00000639659 ERCC6Q03468 1493 aa29.77■■■□□ 2.36
SYNE2-228ENST00000639659 NCAPD3P42695 1498 aa29.74■■■□□ 2.35
SYNE2-228ENST00000639659 CUX2O14529 1486 aa29.68■■■□□ 2.34
SYNE2-228ENST00000639659 ATAD2BQ9ULI0 1458 aa29.68■■■□□ 2.34
SYNE2-228ENST00000639659 SMARCA4P51532 1647 aa29.62■■■□□ 2.33
SYNE2-228ENST00000639659 SMARCA2P51531 1590 aa29.59■■■□□ 2.33
SYNE2-228ENST00000639659 HMGXB3Q12766 1538 aa29.55■■■□□ 2.32
SYNE2-228ENST00000639659 NESP48681 1621 aa29.49■■■□□ 2.31
SYNE2-228ENST00000639659 BAZ1BQ9UIG0 1483 aaKnown RBP29.44■■■□□ 2.3
SYNE2-228ENST00000639659 BAZ1AQ9NRL2 1556 aaPredicted RBP29.42■■■□□ 2.3
SYNE2-228ENST00000639659 PEG3Q9GZU2 1588 aa29.23■■■□□ 2.27
SYNE2-228ENST00000639659 MROH2BQ7Z745 1585 aa29.21■■■□□ 2.27
SYNE2-228ENST00000639659 THOC2Q8NI27 1593 aaKnown RBP29.21■■■□□ 2.27
SYNE2-228ENST00000639659 LAMC3Q9Y6N6 1575 aa29.18■■■□□ 2.26
SYNE2-228ENST00000639659 KIF21AQ7Z4S6 1674 aa29.12■■■□□ 2.25
SYNE2-228ENST00000639659 PDS5BQ9NTI5 1447 aa29.02■■■□□ 2.24
SYNE2-228ENST00000639659 WIZO95785 1651 aa28.88■■■□□ 2.21
SYNE2-228ENST00000639659 CADPSQ9ULU8 1353 aa28.88■■■□□ 2.21
SYNE2-228ENST00000639659 MRC2Q9UBG0 1479 aa28.82■■■□□ 2.2
SYNE2-228ENST00000639659 TRIM41Q8WV44 630 aa28.72■■■□□ 2.19
SYNE2-228ENST00000639659 WDR62O43379 1518 aa28.72■■■□□ 2.19
SYNE2-228ENST00000639659 CEP164Q9UPV0 1460 aa28.67■■■□□ 2.18
SYNE2-228ENST00000639659 FANCD2Q9BXW9 1451 aa28.6■■■□□ 2.17
SYNE2-228ENST00000639659 CFTRP13569 1480 aa28.47■■■□□ 2.15
SYNE2-228ENST00000639659 RSF1Q96T23 1441 aaPredicted RBP28.47■■■□□ 2.15
SYNE2-228ENST00000639659 TOP2AP11388 1531 aaKnown RBP28.46■■■□□ 2.15
SYNE2-228ENST00000639659 URB2Q14146 1524 aaKnown RBP28.38■■■□□ 2.13
SYNE2-228ENST00000639659 OSCARQ8IYS5 282 aa28.3■■■□□ 2.12
SYNE2-228ENST00000639659 PRDM2Q13029 1718 aa28.24■■■□□ 2.11
SYNE2-228ENST00000639659 CCDC88BA6NC98 1476 aa28.13■■■□□ 2.09
SYNE2-228ENST00000639659 ZNF608Q9ULD9 1512 aaPredicted RBP28.09■■■□□ 2.09
SYNE2-228ENST00000639659 IFT140Q96RY7 1462 aa28.07■■■□□ 2.08
SYNE2-228ENST00000639659 TOPBP1Q92547 1522 aa28.02■■■□□ 2.08
SYNE2-228ENST00000639659 RIMBP3CA6NJZ7 1639 aa28.02■■■□□ 2.08
SYNE2-228ENST00000639659 RIMBP3BA6NNM3 1639 aa28.02■■■□□ 2.08
SYNE2-228ENST00000639659 RIMBP3Q9UFD9 1639 aa28.02■■■□□ 2.08
SYNE2-228ENST00000639659 EIF4G3O43432 1585 aaKnown RBP27.94■■■□□ 2.06
SYNE2-228ENST00000639659 DNMBPQ6XZF7 1577 aa27.9■■■□□ 2.06
SYNE2-228ENST00000639659 ABCC8Q09428 1581 aa27.89■■■□□ 2.05
SYNE2-228ENST00000639659 ARHGEF11O15085 1522 aa27.88■■■□□ 2.05
SYNE2-228ENST00000639659 AQRO60306 1485 aaKnown RBP eCLIP27.81■■■□□ 2.04
SYNE2-228ENST00000639659 CHD1O14646 1710 aa27.81■■■□□ 2.04
SYNE2-228ENST00000639659 FBLN2P98095 1184 aa27.77■■■□□ 2.04
SYNE2-228ENST00000639659 TARBP1Q13395 1621 aaKnown RBP27.77■■■□□ 2.04
SYNE2-228ENST00000639659 CYB5RLQ6IPT4 315 aa27.73■■■□□ 2.03
SYNE2-228ENST00000639659 POLA1P09884 1462 aaPredicted RBP27.72■■■□□ 2.03
SYNE2-228ENST00000639659 RAD54L2Q9Y4B4 1467 aa27.67■■■□□ 2.02
SYNE2-228ENST00000639659 TDRD9Q8NDG6 1382 aaKnown RBP27.6■■■□□ 2.01
SYNE2-228ENST00000639659 SOGA1O94964 1423 aa27.59■■■□□ 2.01
SYNE2-228ENST00000639659 ARAP1Q96P48 1450 aa27.59■■■□□ 2.01
SYNE2-228ENST00000639659 TRHP20396 242 aaPredicted RBP27.58■■■□□ 2.01
SYNE2-228ENST00000639659 SNAPC4Q5SXM2 1469 aa27.54■■■□□ 2
SYNE2-228ENST00000639659 FGD5Q6ZNL6 1462 aa27.54■■■□□ 2
SYNE2-228ENST00000639659 CUX1P39880 1505 aa27.46■■□□□ 1.99
SYNE2-228ENST00000639659 CHMP7Q8WUX9 453 aaPredicted RBP27.45■■□□□ 1.98
SYNE2-228ENST00000639659 WDR97A6NE52 1622 aa27.41■■□□□ 1.98
SYNE2-228ENST00000639659 SYNJ1O43426 1573 aa27.4■■□□□ 1.98
SYNE2-228ENST00000639659 CLASP1Q7Z460 1538 aa27.39■■□□□ 1.98
SYNE2-228ENST00000639659 MAGI1Q96QZ7 1491 aaPredicted RBP27.38■■□□□ 1.97
SYNE2-228ENST00000639659 GRIN2BQ13224 1484 aa27.38■■□□□ 1.97
SYNE2-228ENST00000639659 PBRM1Q86U86 1689 aa27.32■■□□□ 1.96
SYNE2-228ENST00000639659 SYNJ2O15056 1496 aa27.31■■□□□ 1.96
SYNE2-228ENST00000639659 GAPVD1Q14C86 1478 aa27.26■■□□□ 1.95
SYNE2-228ENST00000639659 SUPT5HO00267 1087 aaKnown RBP27.2■■□□□ 1.94
SYNE2-228ENST00000639659 ABCA5Q8WWZ7 1642 aa27.16■■□□□ 1.94
SYNE2-228ENST00000639659 ABCA10Q8WWZ4 1543 aa27.16■■□□□ 1.94
SYNE2-228ENST00000639659 GRIN2AQ12879 1464 aa27.03■■□□□ 1.92
SYNE2-228ENST00000639659 WRNQ14191 1432 aaPredicted RBP eCLIP27.02■■□□□ 1.92
SYNE2-228ENST00000639659 ADAMTS12P58397 1594 aa27.01■■□□□ 1.92
SYNE2-228ENST00000639659 ERCC6L2Q5T890 1561 aa27.01■■□□□ 1.92
SYNE2-228ENST00000639659 CEP170Q5SW79 1584 aa26.97■■□□□ 1.91
SYNE2-228ENST00000639659 AEBP2Q6ZN18 517 aaPredicted RBP26.96■■□□□ 1.91
SYNE2-228ENST00000639659 BIVM-ERCC5R4GMW8 1640 aa26.94■■□□□ 1.9
SYNE2-228ENST00000639659 TOP2BQ02880 1626 aa26.93■■□□□ 1.9
SYNE2-228ENST00000639659 NUP160Q12769 1436 aa26.9■■□□□ 1.9
SYNE2-228ENST00000639659 FHAD1B1AJZ9 1412 aa26.88■■□□□ 1.89
SYNE2-228ENST00000639659 SHROOM2Q13796 1616 aa26.82■■□□□ 1.88
SYNE2-228ENST00000639659 ERICH3Q5RHP9 1530 aa26.8■■□□□ 1.88
SYNE2-228ENST00000639659 PRG4Q92954 1404 aaPredicted RBP26.73■■□□□ 1.87
SYNE2-228ENST00000639659 KIF13AQ9H1H9 1805 aa26.65■■□□□ 1.86
SYNE2-228ENST00000639659 JPH4Q96JJ6 628 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms