Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 MYCLP1-201ENST00000372451 1075 ntBASIC15.4■□□□□ 0.06
CCDC58Q4VC31 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 CD81-212ENST00000526072 1172 ntTSL 5 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 AC124947.2-201ENST00000547118 1133 ntBASIC15.4■□□□□ 0.06
CCDC58Q4VC31 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 AC010947.1-201ENST00000623454 693 ntBASIC15.4■□□□□ 0.06
CCDC58Q4VC31 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 CYP2D8P-201ENST00000433633 1490 ntBASIC15.4■□□□□ 0.06
CCDC58Q4VC31 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SLC25A1P3-201ENST00000395415 828 ntBASIC15.39■□□□□ 0.05
CCDC58Q4VC31 KRT18P48-201ENST00000434763 852 ntBASIC15.39■□□□□ 0.05
CCDC58Q4VC31 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AC008550.1-201ENST00000511500 884 ntBASIC15.39■□□□□ 0.05
CCDC58Q4VC31 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 PPOX-214ENST00000535223 664 ntTSL 3 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AL355075.4-201ENST00000554988 638 ntBASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 AL391807.1-203ENST00000604392 2365 ntBASIC15.39■□□□□ 0.05
CCDC58Q4VC31 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
CCDC58Q4VC31 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 AC024909.3-201ENST00000611513 2257 ntBASIC15.38■□□□□ 0.05
CCDC58Q4VC31 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
CCDC58Q4VC31 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms