Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 AC069120.2-201ENST00000524091 540 ntBASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 AL139327.4-201ENST00000612362 153 ntBASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SLC44A3Q8N4M1 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SLC44A3Q8N4M1 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 CRB3P1-201ENST00000449338 276 ntBASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 AC005412.3-201ENST00000580309 715 ntBASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 AC012569.1-201ENST00000591191 1524 ntBASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 502.9 ms