RNA–Protein interactions for RNA: ENST00000334133.8

RFTN1-201, Transcript of raftlin, lipid raft linker 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene RFTN1, Length 2,982 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFTN1-201ENST00000334133 NISCHQ9Y2I1 1504 aa39.81■■■■□ 3.96
RFTN1-201ENST00000334133 SHROOM4Q9ULL8 1493 aa34.16■■■■□ 3.06
RFTN1-201ENST00000334133 CCDC180Q9P1Z9 1646 aa33.79■■■■□ 3
RFTN1-201ENST00000334133 ZCCHC6Q5VYS8 1495 aaKnown RBP33.58■■■□□ 2.97
RFTN1-201ENST00000334133 DCAF8L2P0C7V8 631 aa33.58■■■□□ 2.97
RFTN1-201ENST00000334133 SUPT5HO00267 1087 aaKnown RBP33.37■■■□□ 2.93
RFTN1-201ENST00000334133 DCAF1Q9Y4B6 1507 aa32.46■■■□□ 2.79
RFTN1-201ENST00000334133 CHIC1Q5VXU3 224 aa32.12■■■□□ 2.73
RFTN1-201ENST00000334133 SCRIBQ14160 1630 aa31.95■■■□□ 2.7
RFTN1-201ENST00000334133 MYO15BQ96JP2 1530 aa31.94■■■□□ 2.7
RFTN1-201ENST00000334133 ABCC9O60706 1549 aa31.94■■■□□ 2.7
RFTN1-201ENST00000334133 RSF1Q96T23 1441 aaPredicted RBP31.48■■■□□ 2.63
RFTN1-201ENST00000334133 NACADO15069 1562 aa31.38■■■□□ 2.61
RFTN1-201ENST00000334133 LOC105371045A0A1W2PR82 267 aa31.34■■■□□ 2.61
RFTN1-201ENST00000334133 CECR2Q9BXF3 1484 aa31.24■■■□□ 2.59
RFTN1-201ENST00000334133 RB1CC1Q8TDY2 1594 aa31.14■■■□□ 2.58
RFTN1-201ENST00000334133 MROH2BQ7Z745 1585 aa31.04■■■□□ 2.56
RFTN1-201ENST00000334133 PCGF6Q9BYE7 350 aa31■■■□□ 2.55
RFTN1-201ENST00000334133 TRIM41Q8WV44 630 aa30.96■■■□□ 2.55
RFTN1-201ENST00000334133 FAM9AQ8IZU1 332 aaPredicted RBP30.92■■■□□ 2.54
RFTN1-201ENST00000334133 WIZO95785 1651 aa30.86■■■□□ 2.53
RFTN1-201ENST00000334133 EHMT2Q96KQ7 1210 aa30.83■■■□□ 2.53
RFTN1-201ENST00000334133 HRCP23327 699 aa30.62■■■□□ 2.49
RFTN1-201ENST00000334133 PABPN1Q86U42 306 aaKnown RBP eCLIP30.62■■■□□ 2.49
RFTN1-201ENST00000334133 BAZ1AQ9NRL2 1556 aaPredicted RBP30.56■■■□□ 2.48
RFTN1-201ENST00000334133 UNC13AQ9UPW8 1703 aa30.55■■■□□ 2.48
RFTN1-201ENST00000334133 SMARCA4P51532 1647 aa30.37■■■□□ 2.45
RFTN1-201ENST00000334133 PPARGC1BQ86YN6 1023 aaKnown RBP30.3■■■□□ 2.44
RFTN1-201ENST00000334133 TRIM26Q12899 539 aaPredicted RBP30.27■■■□□ 2.44
RFTN1-201ENST00000334133 TOP2AP11388 1531 aaKnown RBP30.24■■■□□ 2.43
RFTN1-201ENST00000334133 CCDC88BA6NC98 1476 aa30.23■■■□□ 2.43
RFTN1-201ENST00000334133 BICRAQ9NZM4 1560 aa30.2■■■□□ 2.42
RFTN1-201ENST00000334133 ABCC8Q09428 1581 aa30.16■■■□□ 2.42
RFTN1-201ENST00000334133 EIF4G1Q04637 1599 aaKnown RBP30.15■■■□□ 2.42
RFTN1-201ENST00000334133 SMARCA2P51531 1590 aa30.12■■■□□ 2.41
RFTN1-201ENST00000334133 SOGA1O94964 1423 aa29.83■■■□□ 2.37
RFTN1-201ENST00000334133 RUSC2Q8N2Y8 1516 aa29.72■■■□□ 2.35
RFTN1-201ENST00000334133 TTBK1Q5TCY1 1321 aaPredicted RBP29.72■■■□□ 2.35
RFTN1-201ENST00000334133 ATAD2BQ9ULI0 1458 aa29.7■■■□□ 2.35
RFTN1-201ENST00000334133 PEG3Q9GZU2 1588 aa29.66■■■□□ 2.34
RFTN1-201ENST00000334133 BAZ1BQ9UIG0 1483 aaKnown RBP29.64■■■□□ 2.33
RFTN1-201ENST00000334133 UBTFP17480 764 aaKnown RBP29.6■■■□□ 2.33
RFTN1-201ENST00000334133 CSRNP3Q8WYN3 585 aa29.6■■■□□ 2.33
RFTN1-201ENST00000334133 WRNQ14191 1432 aaPredicted RBP eCLIP29.59■■■□□ 2.33
RFTN1-201ENST00000334133 CEP162Q5TB80 1403 aa29.49■■■□□ 2.31
RFTN1-201ENST00000334133 SYNJ1O43426 1573 aa29.45■■■□□ 2.3
RFTN1-201ENST00000334133 TNIKQ9UKE5 1360 aa29.38■■■□□ 2.29
RFTN1-201ENST00000334133 EEA1Q15075 1411 aa29.35■■■□□ 2.29
RFTN1-201ENST00000334133 ZEB1P37275 1124 aaPredicted RBP29.35■■■□□ 2.29
RFTN1-201ENST00000334133 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.34■■■□□ 2.29
RFTN1-201ENST00000334133 RANGAP1P46060 587 aaPredicted RBP29.32■■■□□ 2.28
RFTN1-201ENST00000334133 GOLGA3Q08378 1498 aa29.27■■■□□ 2.28
RFTN1-201ENST00000334133 CCER1Q8TC90 406 aaPredicted RBP29.17■■■□□ 2.26
RFTN1-201ENST00000334133 CEP164Q9UPV0 1460 aa29.11■■■□□ 2.25
RFTN1-201ENST00000334133 NCAPD3P42695 1498 aa29.1■■■□□ 2.25
RFTN1-201ENST00000334133 RAPGEF2Q9Y4G8 1499 aa29.07■■■□□ 2.24
RFTN1-201ENST00000334133 CLIP1P30622 1438 aa29.01■■■□□ 2.23
RFTN1-201ENST00000334133 TOP2BQ02880 1626 aa29.01■■■□□ 2.23
RFTN1-201ENST00000334133 HMGXB3Q12766 1538 aa29■■■□□ 2.23
RFTN1-201ENST00000334133 KIF21BO75037 1637 aa28.99■■■□□ 2.23
RFTN1-201ENST00000334133 CUX1P39880 1505 aa28.88■■■□□ 2.21
RFTN1-201ENST00000334133 BIVM-ERCC5R4GMW8 1640 aa28.85■■■□□ 2.21
RFTN1-201ENST00000334133 HNRNPUL2Q1KMD3 747 aaKnown RBP28.84■■■□□ 2.21
RFTN1-201ENST00000334133 CFTRP13569 1480 aa28.82■■■□□ 2.2
RFTN1-201ENST00000334133 APLP2Q06481 763 aa28.8■■■□□ 2.2
RFTN1-201ENST00000334133 VPS8Q8N3P4 1428 aa28.77■■■□□ 2.2
RFTN1-201ENST00000334133 PRXQ9BXM0 1461 aa28.68■■■□□ 2.18
RFTN1-201ENST00000334133 KIF27Q86VH2 1401 aa28.67■■■□□ 2.18
RFTN1-201ENST00000334133 CADPSQ9ULU8 1353 aa28.61■■■□□ 2.17
RFTN1-201ENST00000334133 CC2D2AQ9P2K1 1620 aa28.61■■■□□ 2.17
RFTN1-201ENST00000334133 ERICH3Q5RHP9 1530 aa28.56■■■□□ 2.16
RFTN1-201ENST00000334133 CUX2O14529 1486 aa28.54■■■□□ 2.16
RFTN1-201ENST00000334133 ARAP1Q96P48 1450 aa28.53■■■□□ 2.16
RFTN1-201ENST00000334133 KANK4Q5T7N3 995 aaPredicted RBP28.52■■■□□ 2.16
RFTN1-201ENST00000334133 FGD5Q6ZNL6 1462 aa28.44■■■□□ 2.14
RFTN1-201ENST00000334133 IGF1RP08069 1367 aa28.43■■■□□ 2.14
RFTN1-201ENST00000334133 PRDM2Q13029 1718 aa28.41■■■□□ 2.14
RFTN1-201ENST00000334133 DIEXFQ68CQ4 756 aaKnown RBP28.38■■■□□ 2.13
RFTN1-201ENST00000334133 NESP48681 1621 aa28.38■■■□□ 2.13
RFTN1-201ENST00000334133 FANCD2Q9BXW9 1451 aa28.36■■■□□ 2.13
RFTN1-201ENST00000334133 ARHGAP35Q9NRY4 1499 aa28.34■■■□□ 2.13
RFTN1-201ENST00000334133 CARMIL1Q5VZK9 1371 aa28.32■■■□□ 2.12
RFTN1-201ENST00000334133 P3H3Q8IVL6 736 aa28.3■■■□□ 2.12
RFTN1-201ENST00000334133 DNAJC5BQ9UF47 199 aa28.29■■■□□ 2.12
RFTN1-201ENST00000334133 RAD54L2Q9Y4B4 1467 aa28.28■■■□□ 2.12
RFTN1-201ENST00000334133 ITGAEP38570 1179 aa28.27■■■□□ 2.12
RFTN1-201ENST00000334133 ATP1B4Q9UN42 357 aaPredicted RBP28.2■■■□□ 2.1
RFTN1-201ENST00000334133 ZNF316A6NFI3 1004 aaPredicted RBP28.19■■■□□ 2.1
RFTN1-201ENST00000334133 TOPBP1Q92547 1522 aa28.12■■■□□ 2.09
RFTN1-201ENST00000334133 POLA1P09884 1462 aaPredicted RBP28.12■■■□□ 2.09
RFTN1-201ENST00000334133 SCAF1Q9H7N4 1312 aaKnown RBP28.12■■■□□ 2.09
RFTN1-201ENST00000334133 DNMBPQ6XZF7 1577 aa28.08■■■□□ 2.09
RFTN1-201ENST00000334133 CCNB3Q8WWL7 1395 aa28.02■■■□□ 2.08
RFTN1-201ENST00000334133 RRBP1Q9P2E9 1410 aaKnown RBP28.01■■■□□ 2.07
RFTN1-201ENST00000334133 DHX57Q6P158 1386 aaKnown RBP28.01■■■□□ 2.07
RFTN1-201ENST00000334133 TDRD9Q8NDG6 1382 aaKnown RBP27.99■■■□□ 2.07
RFTN1-201ENST00000334133 ABCA10Q8WWZ4 1543 aa27.99■■■□□ 2.07
RFTN1-201ENST00000334133 NEUROD1Q13562 356 aa27.99■■■□□ 2.07
RFTN1-201ENST00000334133 FHOD3Q2V2M9 1422 aa27.97■■■□□ 2.07
RFTN1-201ENST00000334133 URB2Q14146 1524 aaKnown RBP27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms