Protein–RNA interactions for Protein: Q9H3S1

SEMA4A, Semaphorin-4A, humanhuman

Predictions only

Length 761 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4AQ9H3S1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC25.59■■□□□ 1.69
SEMA4AQ9H3S1 AC074183.2-201ENST00000623112 922 ntBASIC25.59■■□□□ 1.69
SEMA4AQ9H3S1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SEMA4AQ9H3S1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.58■■□□□ 1.69
SEMA4AQ9H3S1 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SEMA4AQ9H3S1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.58■■□□□ 1.69
SEMA4AQ9H3S1 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SEMA4AQ9H3S1 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.58■■□□□ 1.69
SEMA4AQ9H3S1 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SEMA4AQ9H3S1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.58■■□□□ 1.68
SEMA4AQ9H3S1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.57■■□□□ 1.68
SEMA4AQ9H3S1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
SEMA4AQ9H3S1 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SEMA4AQ9H3S1 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SEMA4AQ9H3S1 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.57■■□□□ 1.68
SEMA4AQ9H3S1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.57■■□□□ 1.68
SEMA4AQ9H3S1 MIR219A2-201ENST00000608502 1504 ntBASIC25.57■■□□□ 1.68
SEMA4AQ9H3S1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SEMA4AQ9H3S1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SEMA4AQ9H3S1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SEMA4AQ9H3S1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SEMA4AQ9H3S1 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.56■■□□□ 1.68
SEMA4AQ9H3S1 THA1P-201ENST00000590384 1145 ntBASIC25.56■■□□□ 1.68
SEMA4AQ9H3S1 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC25.55■■□□□ 1.68
SEMA4AQ9H3S1 WHAMMP2-203ENST00000563942 1603 ntBASIC25.55■■□□□ 1.68
SEMA4AQ9H3S1 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SEMA4AQ9H3S1 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 AC009299.2-201ENST00000482477 511 ntBASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 AL592293.1-201ENST00000502889 1188 ntBASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SEMA4AQ9H3S1 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 RP9P-202ENST00000450133 1212 ntBASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 AC007029.1-201ENST00000604183 313 ntBASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 AC133552.2-201ENST00000619106 1032 ntBASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SEMA4AQ9H3S1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SEMA4AQ9H3S1 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SEMA4AQ9H3S1 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.52■■□□□ 1.68
SEMA4AQ9H3S1 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC25.52■■□□□ 1.68
SEMA4AQ9H3S1 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC25.52■■□□□ 1.68
SEMA4AQ9H3S1 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.52■■□□□ 1.68
SEMA4AQ9H3S1 AC110285.7-201ENST00000624417 1536 ntBASIC25.52■■□□□ 1.68
SEMA4AQ9H3S1 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC25.51■■□□□ 1.67
SEMA4AQ9H3S1 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SEMA4AQ9H3S1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SEMA4AQ9H3S1 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SEMA4AQ9H3S1 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SEMA4AQ9H3S1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SEMA4AQ9H3S1 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC25.51■■□□□ 1.67
SEMA4AQ9H3S1 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC25.51■■□□□ 1.67
SEMA4AQ9H3S1 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SEMA4AQ9H3S1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC25.5■■□□□ 1.67
SEMA4AQ9H3S1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SEMA4AQ9H3S1 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
SEMA4AQ9H3S1 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
SEMA4AQ9H3S1 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SEMA4AQ9H3S1 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
SEMA4AQ9H3S1 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
SEMA4AQ9H3S1 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SEMA4AQ9H3S1 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SEMA4AQ9H3S1 GUSBP5-201ENST00000418136 578 ntBASIC25.48■■□□□ 1.67
SEMA4AQ9H3S1 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SEMA4AQ9H3S1 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
SEMA4AQ9H3S1 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SEMA4AQ9H3S1 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
SEMA4AQ9H3S1 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.47■■□□□ 1.67
SEMA4AQ9H3S1 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC25.47■■□□□ 1.67
SEMA4AQ9H3S1 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SEMA4AQ9H3S1 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.47■■□□□ 1.67
SEMA4AQ9H3S1 BHLHE23-202ENST00000612929 1109 ntBASIC25.47■■□□□ 1.67
SEMA4AQ9H3S1 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SEMA4AQ9H3S1 AC009831.1-201ENST00000580420 1582 ntBASIC25.47■■□□□ 1.67
SEMA4AQ9H3S1 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SEMA4AQ9H3S1 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
SEMA4AQ9H3S1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SEMA4AQ9H3S1 DUSP8P4-201ENST00000399538 1761 ntBASIC25.46■■□□□ 1.67
SEMA4AQ9H3S1 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
SEMA4AQ9H3S1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SEMA4AQ9H3S1 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SEMA4AQ9H3S1 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.45■■□□□ 1.67
SEMA4AQ9H3S1 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.45■■□□□ 1.66
SEMA4AQ9H3S1 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SEMA4AQ9H3S1 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC25.45■■□□□ 1.66
SEMA4AQ9H3S1 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.66
SEMA4AQ9H3S1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.45■■□□□ 1.66
SEMA4AQ9H3S1 AC092803.2-201ENST00000564287 1899 ntBASIC25.45■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms