Protein–RNA interactions for Protein: Q9H3S1

SEMA4A, Semaphorin-4A, humanhuman

Predictions only

Length 761 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4AQ9H3S1 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC35.03■■■■□ 3.2
SEMA4AQ9H3S1 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC34.62■■■■□ 3.13
SEMA4AQ9H3S1 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.5■■■■□ 3.11
SEMA4AQ9H3S1 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC34.25■■■■□ 3.07
SEMA4AQ9H3S1 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.16■■■■□ 3.06
SEMA4AQ9H3S1 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
SEMA4AQ9H3S1 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
SEMA4AQ9H3S1 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.55■■■□□ 2.96
SEMA4AQ9H3S1 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.55■■■□□ 2.96
SEMA4AQ9H3S1 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.41■■■□□ 2.94
SEMA4AQ9H3S1 AL356512.1-201ENST00000607453 1739 ntBASIC33.39■■■□□ 2.94
SEMA4AQ9H3S1 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.35■■■□□ 2.93
SEMA4AQ9H3S1 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
SEMA4AQ9H3S1 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
SEMA4AQ9H3S1 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
SEMA4AQ9H3S1 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
SEMA4AQ9H3S1 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.27■■■□□ 2.92
SEMA4AQ9H3S1 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.88
SEMA4AQ9H3S1 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC32.99■■■□□ 2.87
SEMA4AQ9H3S1 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
SEMA4AQ9H3S1 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
SEMA4AQ9H3S1 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.84■■■□□ 2.85
SEMA4AQ9H3S1 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.82■■■□□ 2.84
SEMA4AQ9H3S1 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.76■■■□□ 2.83
SEMA4AQ9H3S1 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.74■■■□□ 2.83
SEMA4AQ9H3S1 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC32.6■■■□□ 2.81
SEMA4AQ9H3S1 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.57■■■□□ 2.8
SEMA4AQ9H3S1 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.55■■■□□ 2.8
SEMA4AQ9H3S1 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
SEMA4AQ9H3S1 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.4■■■□□ 2.78
SEMA4AQ9H3S1 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.34■■■□□ 2.77
SEMA4AQ9H3S1 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.32■■■□□ 2.77
SEMA4AQ9H3S1 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.32■■■□□ 2.76
SEMA4AQ9H3S1 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
SEMA4AQ9H3S1 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
SEMA4AQ9H3S1 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
SEMA4AQ9H3S1 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC32.23■■■□□ 2.75
SEMA4AQ9H3S1 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.21■■■□□ 2.75
SEMA4AQ9H3S1 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC32.2■■■□□ 2.75
SEMA4AQ9H3S1 ZNRF2P1-201ENST00000441407 443 ntBASIC32.2■■■□□ 2.75
SEMA4AQ9H3S1 AC006077.2-201ENST00000623591 457 ntBASIC32.16■■■□□ 2.74
SEMA4AQ9H3S1 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.16■■■□□ 2.74
SEMA4AQ9H3S1 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
SEMA4AQ9H3S1 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
SEMA4AQ9H3S1 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
SEMA4AQ9H3S1 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.95■■■□□ 2.71
SEMA4AQ9H3S1 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.93■■■□□ 2.7
SEMA4AQ9H3S1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
SEMA4AQ9H3S1 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.87■■■□□ 2.69
SEMA4AQ9H3S1 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
SEMA4AQ9H3S1 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SEMA4AQ9H3S1 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.7■■■□□ 2.67
SEMA4AQ9H3S1 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.56■■■□□ 2.64
SEMA4AQ9H3S1 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
SEMA4AQ9H3S1 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.63
SEMA4AQ9H3S1 AC015813.7-201ENST00000623294 581 ntBASIC31.47■■■□□ 2.63
SEMA4AQ9H3S1 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SEMA4AQ9H3S1 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.38■■■□□ 2.61
SEMA4AQ9H3S1 AP002365.1-201ENST00000603448 772 ntBASIC31.32■■■□□ 2.6
SEMA4AQ9H3S1 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
SEMA4AQ9H3S1 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.28■■■□□ 2.6
SEMA4AQ9H3S1 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
SEMA4AQ9H3S1 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.59
SEMA4AQ9H3S1 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SEMA4AQ9H3S1 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SEMA4AQ9H3S1 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.09■■■□□ 2.57
SEMA4AQ9H3S1 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.07■■■□□ 2.56
SEMA4AQ9H3S1 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
SEMA4AQ9H3S1 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SEMA4AQ9H3S1 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.97■■■□□ 2.55
SEMA4AQ9H3S1 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SEMA4AQ9H3S1 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.94■■■□□ 2.54
SEMA4AQ9H3S1 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SEMA4AQ9H3S1 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SEMA4AQ9H3S1 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SEMA4AQ9H3S1 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
SEMA4AQ9H3S1 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
SEMA4AQ9H3S1 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.85■■■□□ 2.53
SEMA4AQ9H3S1 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SEMA4AQ9H3S1 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.82■■■□□ 2.52
SEMA4AQ9H3S1 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SEMA4AQ9H3S1 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.78■■■□□ 2.52
SEMA4AQ9H3S1 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
SEMA4AQ9H3S1 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.75■■■□□ 2.51
SEMA4AQ9H3S1 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
SEMA4AQ9H3S1 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.72■■■□□ 2.51
SEMA4AQ9H3S1 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SEMA4AQ9H3S1 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.69■■■□□ 2.5
SEMA4AQ9H3S1 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.68■■■□□ 2.5
SEMA4AQ9H3S1 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SEMA4AQ9H3S1 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
SEMA4AQ9H3S1 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SEMA4AQ9H3S1 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.58■■■□□ 2.49
SEMA4AQ9H3S1 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.58■■■□□ 2.49
SEMA4AQ9H3S1 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.58■■■□□ 2.49
SEMA4AQ9H3S1 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.56■■■□□ 2.48
SEMA4AQ9H3S1 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.55■■■□□ 2.48
SEMA4AQ9H3S1 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SEMA4AQ9H3S1 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.54■■■□□ 2.48
SEMA4AQ9H3S1 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.53■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms