Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
USHBP1Q8N6Y0 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC32.38■■■□□ 2.77
USHBP1Q8N6Y0 THA1P-201ENST00000590384 1145 ntBASIC32.38■■■□□ 2.77
USHBP1Q8N6Y0 LINC01003-201ENST00000564834 1764 ntBASIC32.37■■■□□ 2.77
USHBP1Q8N6Y0 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC32.37■■■□□ 2.77
USHBP1Q8N6Y0 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
USHBP1Q8N6Y0 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
USHBP1Q8N6Y0 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC32.37■■■□□ 2.77
USHBP1Q8N6Y0 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
USHBP1Q8N6Y0 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC32.36■■■□□ 2.77
USHBP1Q8N6Y0 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC32.36■■■□□ 2.77
USHBP1Q8N6Y0 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
USHBP1Q8N6Y0 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
USHBP1Q8N6Y0 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC32.36■■■□□ 2.77
USHBP1Q8N6Y0 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC32.36■■■□□ 2.77
USHBP1Q8N6Y0 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
USHBP1Q8N6Y0 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC32.35■■■□□ 2.77
USHBP1Q8N6Y0 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
USHBP1Q8N6Y0 LONRF2P2-201ENST00000439212 571 ntBASIC32.34■■■□□ 2.77
USHBP1Q8N6Y0 AC019171.1-201ENST00000601251 1056 ntBASIC32.34■■■□□ 2.77
USHBP1Q8N6Y0 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
USHBP1Q8N6Y0 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
USHBP1Q8N6Y0 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC32.34■■■□□ 2.77
USHBP1Q8N6Y0 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC32.33■■■□□ 2.77
USHBP1Q8N6Y0 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
USHBP1Q8N6Y0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC32.33■■■□□ 2.77
USHBP1Q8N6Y0 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
USHBP1Q8N6Y0 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC32.32■■■□□ 2.76
USHBP1Q8N6Y0 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
USHBP1Q8N6Y0 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
USHBP1Q8N6Y0 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
USHBP1Q8N6Y0 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC32.32■■■□□ 2.76
USHBP1Q8N6Y0 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
USHBP1Q8N6Y0 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC32.32■■■□□ 2.76
USHBP1Q8N6Y0 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC32.31■■■□□ 2.76
USHBP1Q8N6Y0 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
USHBP1Q8N6Y0 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
USHBP1Q8N6Y0 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
USHBP1Q8N6Y0 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC32.31■■■□□ 2.76
USHBP1Q8N6Y0 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
USHBP1Q8N6Y0 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC32.3■■■□□ 2.76
USHBP1Q8N6Y0 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC32.3■■■□□ 2.76
USHBP1Q8N6Y0 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
USHBP1Q8N6Y0 RNF146-205ENST00000477776 762 ntTSL 3 BASIC32.3■■■□□ 2.76
USHBP1Q8N6Y0 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC32.3■■■□□ 2.76
USHBP1Q8N6Y0 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
USHBP1Q8N6Y0 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC32.3■■■□□ 2.76
USHBP1Q8N6Y0 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC32.3■■■□□ 2.76
USHBP1Q8N6Y0 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC32.3■■■□□ 2.76
USHBP1Q8N6Y0 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC32.29■■■□□ 2.76
USHBP1Q8N6Y0 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC32.29■■■□□ 2.76
USHBP1Q8N6Y0 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
USHBP1Q8N6Y0 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USHBP1Q8N6Y0 AC239859.2-201ENST00000444165 318 ntBASIC32.28■■■□□ 2.76
USHBP1Q8N6Y0 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USHBP1Q8N6Y0 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC32.28■■■□□ 2.76
USHBP1Q8N6Y0 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USHBP1Q8N6Y0 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
USHBP1Q8N6Y0 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
USHBP1Q8N6Y0 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC32.26■■■□□ 2.76
USHBP1Q8N6Y0 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
USHBP1Q8N6Y0 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC32.26■■■□□ 2.75
USHBP1Q8N6Y0 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.75
USHBP1Q8N6Y0 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC32.26■■■□□ 2.75
USHBP1Q8N6Y0 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
USHBP1Q8N6Y0 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC32.26■■■□□ 2.75
USHBP1Q8N6Y0 AL356441.2-201ENST00000443009 864 ntBASIC32.25■■■□□ 2.75
USHBP1Q8N6Y0 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
USHBP1Q8N6Y0 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC32.24■■■□□ 2.75
USHBP1Q8N6Y0 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
USHBP1Q8N6Y0 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC32.23■■■□□ 2.75
USHBP1Q8N6Y0 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
USHBP1Q8N6Y0 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC32.23■■■□□ 2.75
USHBP1Q8N6Y0 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
USHBP1Q8N6Y0 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC32.22■■■□□ 2.75
USHBP1Q8N6Y0 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
USHBP1Q8N6Y0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC32.22■■■□□ 2.75
USHBP1Q8N6Y0 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC32.22■■■□□ 2.75
USHBP1Q8N6Y0 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
USHBP1Q8N6Y0 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
USHBP1Q8N6Y0 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC32.21■■■□□ 2.75
USHBP1Q8N6Y0 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC32.21■■■□□ 2.75
USHBP1Q8N6Y0 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC32.21■■■□□ 2.75
USHBP1Q8N6Y0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC32.21■■■□□ 2.75
USHBP1Q8N6Y0 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC32.21■■■□□ 2.75
USHBP1Q8N6Y0 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
USHBP1Q8N6Y0 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
USHBP1Q8N6Y0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC32.2■■■□□ 2.75
USHBP1Q8N6Y0 BX255925.1-201ENST00000566954 1854 ntBASIC32.2■■■□□ 2.74
USHBP1Q8N6Y0 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
USHBP1Q8N6Y0 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC32.19■■■□□ 2.74
USHBP1Q8N6Y0 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC32.19■■■□□ 2.74
USHBP1Q8N6Y0 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC32.19■■■□□ 2.74
USHBP1Q8N6Y0 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
USHBP1Q8N6Y0 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
USHBP1Q8N6Y0 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC32.18■■■□□ 2.74
USHBP1Q8N6Y0 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
USHBP1Q8N6Y0 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC32.18■■■□□ 2.74
USHBP1Q8N6Y0 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
USHBP1Q8N6Y0 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms