Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CCDC88AQ3V6T2 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88AQ3V6T2 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88AQ3V6T2 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.16■■■□□ 2.42
CCDC88AQ3V6T2 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC30.16■■■□□ 2.42
CCDC88AQ3V6T2 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88AQ3V6T2 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88AQ3V6T2 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
CCDC88AQ3V6T2 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC30.15■■■□□ 2.42
CCDC88AQ3V6T2 KRT125P-201ENST00000546827 989 ntBASIC30.15■■■□□ 2.42
CCDC88AQ3V6T2 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.15■■■□□ 2.42
CCDC88AQ3V6T2 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88AQ3V6T2 DRD5P2-201ENST00000421395 2012 ntBASIC30.15■■■□□ 2.42
CCDC88AQ3V6T2 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC30.15■■■□□ 2.42
CCDC88AQ3V6T2 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88AQ3V6T2 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC30.14■■■□□ 2.42
CCDC88AQ3V6T2 LONRF2P2-201ENST00000439212 571 ntBASIC30.14■■■□□ 2.42
CCDC88AQ3V6T2 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88AQ3V6T2 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC88AQ3V6T2 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC30.13■■■□□ 2.41
CCDC88AQ3V6T2 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC30.13■■■□□ 2.41
CCDC88AQ3V6T2 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88AQ3V6T2 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88AQ3V6T2 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88AQ3V6T2 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC30.12■■■□□ 2.41
CCDC88AQ3V6T2 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC88AQ3V6T2 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
CCDC88AQ3V6T2 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC88AQ3V6T2 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
CCDC88AQ3V6T2 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC88AQ3V6T2 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88AQ3V6T2 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88AQ3V6T2 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88AQ3V6T2 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88AQ3V6T2 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
CCDC88AQ3V6T2 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC88AQ3V6T2 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.08■■■□□ 2.41
CCDC88AQ3V6T2 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.08■■■□□ 2.41
CCDC88AQ3V6T2 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC88AQ3V6T2 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.08■■■□□ 2.41
CCDC88AQ3V6T2 AC110285.6-201ENST00000617652 491 ntBASIC30.08■■■□□ 2.41
CCDC88AQ3V6T2 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
CCDC88AQ3V6T2 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
CCDC88AQ3V6T2 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88AQ3V6T2 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88AQ3V6T2 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88AQ3V6T2 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88AQ3V6T2 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88AQ3V6T2 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC30.06■■■□□ 2.4
CCDC88AQ3V6T2 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88AQ3V6T2 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
CCDC88AQ3V6T2 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88AQ3V6T2 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.05■■■□□ 2.4
CCDC88AQ3V6T2 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88AQ3V6T2 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88AQ3V6T2 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
CCDC88AQ3V6T2 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.04■■■□□ 2.4
CCDC88AQ3V6T2 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
CCDC88AQ3V6T2 WHAMMP3-201ENST00000611636 1609 ntBASIC30.03■■■□□ 2.4
CCDC88AQ3V6T2 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CCDC88AQ3V6T2 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CCDC88AQ3V6T2 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CCDC88AQ3V6T2 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
CCDC88AQ3V6T2 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.03■■■□□ 2.4
CCDC88AQ3V6T2 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 RPS2P7-201ENST00000447334 885 ntBASIC30.02■■■□□ 2.4
CCDC88AQ3V6T2 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
CCDC88AQ3V6T2 AL139246.5-201ENST00000606645 996 ntBASIC30.01■■■□□ 2.39
CCDC88AQ3V6T2 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.01■■■□□ 2.39
CCDC88AQ3V6T2 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30■■■□□ 2.39
CCDC88AQ3V6T2 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30■■■□□ 2.39
CCDC88AQ3V6T2 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30■■■□□ 2.39
CCDC88AQ3V6T2 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30■■■□□ 2.39
CCDC88AQ3V6T2 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC30■■■□□ 2.39
CCDC88AQ3V6T2 NALT1-201ENST00000429224 738 ntTSL 5 BASIC29.99■■■□□ 2.39
CCDC88AQ3V6T2 AC022616.5-201ENST00000518796 181 ntBASIC29.99■■■□□ 2.39
CCDC88AQ3V6T2 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
CCDC88AQ3V6T2 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC29.99■■■□□ 2.39
CCDC88AQ3V6T2 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC29.99■■■□□ 2.39
CCDC88AQ3V6T2 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC29.99■■■□□ 2.39
CCDC88AQ3V6T2 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC88AQ3V6T2 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC88AQ3V6T2 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC29.98■■■□□ 2.39
CCDC88AQ3V6T2 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC88AQ3V6T2 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC88AQ3V6T2 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC88AQ3V6T2 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC29.97■■■□□ 2.39
CCDC88AQ3V6T2 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC29.97■■■□□ 2.39
CCDC88AQ3V6T2 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
CCDC88AQ3V6T2 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC29.97■■■□□ 2.39
CCDC88AQ3V6T2 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
CCDC88AQ3V6T2 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC29.97■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms