Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SCN1AP35498 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SCN1AP35498 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
SCN1AP35498 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
SCN1AP35498 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
SCN1AP35498 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
SCN1AP35498 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SCN1AP35498 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.05■■□□□ 1.76
SCN1AP35498 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
SCN1AP35498 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.05■■□□□ 1.76
SCN1AP35498 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.05■■□□□ 1.76
SCN1AP35498 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SCN1AP35498 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
SCN1AP35498 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.04■■□□□ 1.76
SCN1AP35498 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SCN1AP35498 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
SCN1AP35498 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.04■■□□□ 1.76
SCN1AP35498 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.04■■□□□ 1.76
SCN1AP35498 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SCN1AP35498 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
SCN1AP35498 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC26.04■■□□□ 1.76
SCN1AP35498 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC26.04■■□□□ 1.76
SCN1AP35498 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SCN1AP35498 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.03■■□□□ 1.76
SCN1AP35498 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
SCN1AP35498 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SCN1AP35498 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SCN1AP35498 GUK1-208ENST00000366728 842 ntTSL 2 BASIC26.02■■□□□ 1.76
SCN1AP35498 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
SCN1AP35498 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
SCN1AP35498 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SCN1AP35498 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC26.02■■□□□ 1.76
SCN1AP35498 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC26.02■■□□□ 1.76
SCN1AP35498 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.76
SCN1AP35498 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SCN1AP35498 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SCN1AP35498 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
SCN1AP35498 MIR6765-201ENST00000614092 87 ntBASIC26■■□□□ 1.75
SCN1AP35498 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
SCN1AP35498 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SCN1AP35498 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SCN1AP35498 DUX4L18-201ENST00000553347 1267 ntBASIC25.99■■□□□ 1.75
SCN1AP35498 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
SCN1AP35498 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
SCN1AP35498 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
SCN1AP35498 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC25.98■■□□□ 1.75
SCN1AP35498 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC25.98■■□□□ 1.75
SCN1AP35498 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SCN1AP35498 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.98■■□□□ 1.75
SCN1AP35498 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.75
SCN1AP35498 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SCN1AP35498 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
SCN1AP35498 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SCN1AP35498 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.97■■□□□ 1.75
SCN1AP35498 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SCN1AP35498 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SCN1AP35498 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SCN1AP35498 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SCN1AP35498 IDNK-203ENST00000405990 629 ntTSL 2 BASIC25.96■■□□□ 1.75
SCN1AP35498 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.95■■□□□ 1.75
SCN1AP35498 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC25.95■■□□□ 1.75
SCN1AP35498 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SCN1AP35498 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.74
SCN1AP35498 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SCN1AP35498 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SCN1AP35498 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SCN1AP35498 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.94■■□□□ 1.74
SCN1AP35498 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC25.94■■□□□ 1.74
SCN1AP35498 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC25.94■■□□□ 1.74
SCN1AP35498 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
SCN1AP35498 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC25.93■■□□□ 1.74
SCN1AP35498 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC25.93■■□□□ 1.74
SCN1AP35498 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.93■■□□□ 1.74
SCN1AP35498 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
SCN1AP35498 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
SCN1AP35498 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
SCN1AP35498 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SCN1AP35498 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SCN1AP35498 PVT1_1.1-201ENST00000615125 194 ntBASIC25.91■■□□□ 1.74
SCN1AP35498 BEX3-202ENST00000372634 753 ntTSL 2 BASIC25.9■■□□□ 1.74
SCN1AP35498 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SCN1AP35498 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
SCN1AP35498 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
SCN1AP35498 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC25.89■■□□□ 1.74
SCN1AP35498 ERN1-208ENST00000606895 2068 ntBASIC25.89■■□□□ 1.73
SCN1AP35498 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
SCN1AP35498 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
SCN1AP35498 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC25.88■■□□□ 1.73
SCN1AP35498 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SCN1AP35498 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SCN1AP35498 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
SCN1AP35498 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SCN1AP35498 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
SCN1AP35498 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SCN1AP35498 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
SCN1AP35498 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
SCN1AP35498 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.85■■□□□ 1.73
SCN1AP35498 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC25.85■■□□□ 1.73
SCN1AP35498 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SCN1AP35498 HYI-210ENST00000486909 905 ntTSL 5 BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms