Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PVT1_1.1-201ENST00000615125 194 ntBASIC20.44■□□□□ 0.86
USF1P22415 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USF1P22415 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USF1P22415 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
USF1P22415 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USF1P22415 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USF1P22415 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USF1P22415 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.43■□□□□ 0.86
USF1P22415 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.43■□□□□ 0.86
USF1P22415 MIR4508-201ENST00000584178 70 ntBASIC20.43■□□□□ 0.86
USF1P22415 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USF1P22415 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
USF1P22415 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.43■□□□□ 0.86
USF1P22415 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USF1P22415 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.43■□□□□ 0.86
USF1P22415 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USF1P22415 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USF1P22415 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USF1P22415 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USF1P22415 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USF1P22415 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USF1P22415 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USF1P22415 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
USF1P22415 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.42■□□□□ 0.86
USF1P22415 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
USF1P22415 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
USF1P22415 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USF1P22415 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.41■□□□□ 0.86
USF1P22415 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USF1P22415 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
USF1P22415 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
USF1P22415 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.4■□□□□ 0.86
USF1P22415 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 LINC01003-201ENST00000564834 1764 ntBASIC20.4■□□□□ 0.86
USF1P22415 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USF1P22415 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
USF1P22415 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USF1P22415 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USF1P22415 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.39■□□□□ 0.85
USF1P22415 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
USF1P22415 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USF1P22415 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
USF1P22415 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.39■□□□□ 0.85
USF1P22415 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USF1P22415 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
USF1P22415 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
USF1P22415 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.37■□□□□ 0.85
USF1P22415 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.37■□□□□ 0.85
USF1P22415 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USF1P22415 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USF1P22415 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.37■□□□□ 0.85
USF1P22415 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USF1P22415 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
USF1P22415 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
USF1P22415 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USF1P22415 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
USF1P22415 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
USF1P22415 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.36■□□□□ 0.85
USF1P22415 AL031848.2-201ENST00000607670 837 ntBASIC20.36■□□□□ 0.85
USF1P22415 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
USF1P22415 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
USF1P22415 AL121749.1-202ENST00000609313 2153 ntBASIC20.35■□□□□ 0.85
USF1P22415 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
USF1P22415 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.34■□□□□ 0.85
USF1P22415 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USF1P22415 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USF1P22415 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
USF1P22415 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.34■□□□□ 0.85
USF1P22415 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USF1P22415 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USF1P22415 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
USF1P22415 AC019171.1-201ENST00000601251 1056 ntBASIC20.34■□□□□ 0.85
USF1P22415 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.34■□□□□ 0.85
USF1P22415 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
USF1P22415 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USF1P22415 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.33■□□□□ 0.85
USF1P22415 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
USF1P22415 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.33■□□□□ 0.85
USF1P22415 AC103724.3-201ENST00000564481 992 ntBASIC20.33■□□□□ 0.85
USF1P22415 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
USF1P22415 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USF1P22415 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.32■□□□□ 0.84
USF1P22415 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
USF1P22415 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.31■□□□□ 0.84
USF1P22415 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USF1P22415 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USF1P22415 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
USF1P22415 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
USF1P22415 GUSBP5-201ENST00000418136 578 ntBASIC20.31■□□□□ 0.84
USF1P22415 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USF1P22415 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.31■□□□□ 0.84
USF1P22415 AC087393.1-201ENST00000582896 145 ntBASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms