Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
PDGFAP04085 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.55■■□□□ 1.2
PDGFAP04085 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
PDGFAP04085 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC22.54■■□□□ 1.2
PDGFAP04085 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PDGFAP04085 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PDGFAP04085 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.54■■□□□ 1.2
PDGFAP04085 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PDGFAP04085 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.54■■□□□ 1.2
PDGFAP04085 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.54■■□□□ 1.2
PDGFAP04085 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
PDGFAP04085 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
PDGFAP04085 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC22.53■■□□□ 1.2
PDGFAP04085 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
PDGFAP04085 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PDGFAP04085 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PDGFAP04085 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.53■■□□□ 1.2
PDGFAP04085 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.53■■□□□ 1.2
PDGFAP04085 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.53■■□□□ 1.2
PDGFAP04085 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC22.52■■□□□ 1.2
PDGFAP04085 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PDGFAP04085 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
PDGFAP04085 CREM-210ENST00000374721 2020 ntTSL 5 BASIC22.52■■□□□ 1.2
PDGFAP04085 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
PDGFAP04085 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PDGFAP04085 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.52■■□□□ 1.2
PDGFAP04085 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFAP04085 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFAP04085 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC22.51■■□□□ 1.19
PDGFAP04085 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFAP04085 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFAP04085 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFAP04085 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PDGFAP04085 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PDGFAP04085 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PDGFAP04085 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
PDGFAP04085 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PDGFAP04085 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
PDGFAP04085 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
PDGFAP04085 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
PDGFAP04085 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PDGFAP04085 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
PDGFAP04085 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.49■■□□□ 1.19
PDGFAP04085 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.49■■□□□ 1.19
PDGFAP04085 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFAP04085 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFAP04085 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PDGFAP04085 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.48■■□□□ 1.19
PDGFAP04085 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFAP04085 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFAP04085 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC22.48■■□□□ 1.19
PDGFAP04085 AC239859.2-201ENST00000444165 318 ntBASIC22.48■■□□□ 1.19
PDGFAP04085 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFAP04085 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.48■■□□□ 1.19
PDGFAP04085 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFAP04085 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFAP04085 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFAP04085 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PDGFAP04085 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFAP04085 WHAMMP3-201ENST00000611636 1609 ntBASIC22.47■■□□□ 1.19
PDGFAP04085 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
PDGFAP04085 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PDGFAP04085 AC087393.1-201ENST00000582896 145 ntBASIC22.47■■□□□ 1.19
PDGFAP04085 AC019171.1-201ENST00000601251 1056 ntBASIC22.47■■□□□ 1.19
PDGFAP04085 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.47■■□□□ 1.19
PDGFAP04085 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.47■■□□□ 1.19
PDGFAP04085 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC22.46■■□□□ 1.19
PDGFAP04085 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
PDGFAP04085 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PDGFAP04085 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.46■■□□□ 1.19
PDGFAP04085 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
PDGFAP04085 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PDGFAP04085 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PDGFAP04085 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PDGFAP04085 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
PDGFAP04085 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.45■■□□□ 1.18
PDGFAP04085 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.45■■□□□ 1.18
PDGFAP04085 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.44■■□□□ 1.18
PDGFAP04085 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PDGFAP04085 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PDGFAP04085 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PDGFAP04085 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
PDGFAP04085 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
PDGFAP04085 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.44■■□□□ 1.18
PDGFAP04085 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PDGFAP04085 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFAP04085 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFAP04085 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.43■■□□□ 1.18
PDGFAP04085 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFAP04085 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFAP04085 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22.43■■□□□ 1.18
PDGFAP04085 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.43■■□□□ 1.18
PDGFAP04085 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.43■■□□□ 1.18
PDGFAP04085 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.43■■□□□ 1.18
PDGFAP04085 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
PDGFAP04085 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.43■■□□□ 1.18
PDGFAP04085 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.42■■□□□ 1.18
PDGFAP04085 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PDGFAP04085 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.42■■□□□ 1.18
PDGFAP04085 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.42■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms