Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.89■■□□□ 1.58
PDGFBP01127 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
PDGFBP01127 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
PDGFBP01127 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
PDGFBP01127 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC24.89■■□□□ 1.57
PDGFBP01127 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.89■■□□□ 1.57
PDGFBP01127 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PDGFBP01127 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PDGFBP01127 AC137630.3-201ENST00000607245 391 ntBASIC24.88■■□□□ 1.57
PDGFBP01127 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PDGFBP01127 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PDGFBP01127 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.87■■□□□ 1.57
PDGFBP01127 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.87■■□□□ 1.57
PDGFBP01127 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.87■■□□□ 1.57
PDGFBP01127 AC021242.3-201ENST00000607598 1377 ntBASIC24.87■■□□□ 1.57
PDGFBP01127 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.87■■□□□ 1.57
PDGFBP01127 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
PDGFBP01127 KRT18P24-201ENST00000344739 1156 ntBASIC24.86■■□□□ 1.57
PDGFBP01127 RARRES2P6-201ENST00000567333 442 ntBASIC24.86■■□□□ 1.57
PDGFBP01127 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PDGFBP01127 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.85■■□□□ 1.57
PDGFBP01127 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.85■■□□□ 1.57
PDGFBP01127 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PDGFBP01127 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
PDGFBP01127 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
PDGFBP01127 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
PDGFBP01127 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PDGFBP01127 ZNRF2P3-201ENST00000424200 374 ntBASIC24.84■■□□□ 1.57
PDGFBP01127 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.84■■□□□ 1.57
PDGFBP01127 AL117332.1-201ENST00000622628 974 ntBASIC24.84■■□□□ 1.57
PDGFBP01127 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
PDGFBP01127 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
PDGFBP01127 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
PDGFBP01127 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PDGFBP01127 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.83■■□□□ 1.57
PDGFBP01127 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.83■■□□□ 1.57
PDGFBP01127 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.83■■□□□ 1.57
PDGFBP01127 AC092028.1-203ENST00000608262 953 ntBASIC24.83■■□□□ 1.57
PDGFBP01127 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
PDGFBP01127 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
PDGFBP01127 ST7-AS1-201ENST00000456775 1889 ntBASIC24.82■■□□□ 1.56
PDGFBP01127 AC022616.5-201ENST00000518796 181 ntBASIC24.82■■□□□ 1.56
PDGFBP01127 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.82■■□□□ 1.56
PDGFBP01127 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
PDGFBP01127 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PDGFBP01127 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC24.81■■□□□ 1.56
PDGFBP01127 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PDGFBP01127 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
PDGFBP01127 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC24.8■■□□□ 1.56
PDGFBP01127 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.8■■□□□ 1.56
PDGFBP01127 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.8■■□□□ 1.56
PDGFBP01127 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.8■■□□□ 1.56
PDGFBP01127 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.8■■□□□ 1.56
PDGFBP01127 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
PDGFBP01127 WHAMMP3-201ENST00000611636 1609 ntBASIC24.79■■□□□ 1.56
PDGFBP01127 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.79■■□□□ 1.56
PDGFBP01127 MIR4466-201ENST00000606121 54 ntBASIC24.79■■□□□ 1.56
PDGFBP01127 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.79■■□□□ 1.56
PDGFBP01127 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.79■■□□□ 1.56
PDGFBP01127 ABCB10P3-201ENST00000561950 2166 ntBASIC24.78■■□□□ 1.56
PDGFBP01127 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC24.78■■□□□ 1.56
PDGFBP01127 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
PDGFBP01127 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
PDGFBP01127 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC24.78■■□□□ 1.56
PDGFBP01127 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PDGFBP01127 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.78■■□□□ 1.56
PDGFBP01127 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PDGFBP01127 AP002414.2-202ENST00000590929 1450 ntBASIC24.77■■□□□ 1.56
PDGFBP01127 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PDGFBP01127 AC120024.1-201ENST00000562672 995 ntBASIC24.77■■□□□ 1.56
PDGFBP01127 MIR3621-201ENST00000580529 85 ntBASIC24.77■■□□□ 1.56
PDGFBP01127 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
PDGFBP01127 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
PDGFBP01127 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.76■■□□□ 1.55
PDGFBP01127 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
PDGFBP01127 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.76■■□□□ 1.55
PDGFBP01127 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.76■■□□□ 1.55
PDGFBP01127 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.76■■□□□ 1.55
PDGFBP01127 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PDGFBP01127 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.75■■□□□ 1.55
PDGFBP01127 AC026271.2-201ENST00000428091 497 ntBASIC24.75■■□□□ 1.55
PDGFBP01127 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PDGFBP01127 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
PDGFBP01127 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PDGFBP01127 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PDGFBP01127 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PDGFBP01127 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PDGFBP01127 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDGFBP01127 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PDGFBP01127 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDGFBP01127 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
PDGFBP01127 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
PDGFBP01127 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PDGFBP01127 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.72■■□□□ 1.55
PDGFBP01127 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PDGFBP01127 AC133561.4-201ENST00000566112 224 ntBASIC24.72■■□□□ 1.55
PDGFBP01127 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.71■■□□□ 1.55
PDGFBP01127 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC24.71■■□□□ 1.55
PDGFBP01127 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.71■■□□□ 1.55
PDGFBP01127 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms