Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRAV17A0A0B4J275 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.13■■□□□ 1.13
TRAV17A0A0B4J275 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
TRAV17A0A0B4J275 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV17A0A0B4J275 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV17A0A0B4J275 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV17A0A0B4J275 AC139426.1-201ENST00000568218 2529 ntBASIC22.13■■□□□ 1.13
TRAV17A0A0B4J275 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV17A0A0B4J275 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV17A0A0B4J275 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV17A0A0B4J275 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV17A0A0B4J275 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV17A0A0B4J275 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.12■■□□□ 1.13
TRAV17A0A0B4J275 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.12■■□□□ 1.13
TRAV17A0A0B4J275 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV17A0A0B4J275 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.12■■□□□ 1.13
TRAV17A0A0B4J275 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV17A0A0B4J275 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV17A0A0B4J275 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV17A0A0B4J275 GUSBP5-201ENST00000418136 578 ntBASIC22.1■■□□□ 1.13
TRAV17A0A0B4J275 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TRAV17A0A0B4J275 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.09■■□□□ 1.13
TRAV17A0A0B4J275 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
TRAV17A0A0B4J275 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
TRAV17A0A0B4J275 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.09■■□□□ 1.13
TRAV17A0A0B4J275 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.09■■□□□ 1.13
TRAV17A0A0B4J275 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC22.09■■□□□ 1.13
TRAV17A0A0B4J275 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRAV17A0A0B4J275 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
TRAV17A0A0B4J275 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.08■■□□□ 1.13
TRAV17A0A0B4J275 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.08■■□□□ 1.13
TRAV17A0A0B4J275 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
TRAV17A0A0B4J275 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
TRAV17A0A0B4J275 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
TRAV17A0A0B4J275 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TRAV17A0A0B4J275 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
TRAV17A0A0B4J275 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV17A0A0B4J275 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.07■■□□□ 1.12
TRAV17A0A0B4J275 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.07■■□□□ 1.12
TRAV17A0A0B4J275 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV17A0A0B4J275 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV17A0A0B4J275 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.06■■□□□ 1.12
TRAV17A0A0B4J275 AC022616.5-201ENST00000518796 181 ntBASIC22.06■■□□□ 1.12
TRAV17A0A0B4J275 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV17A0A0B4J275 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
TRAV17A0A0B4J275 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV17A0A0B4J275 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV17A0A0B4J275 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV17A0A0B4J275 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV17A0A0B4J275 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.05■■□□□ 1.12
TRAV17A0A0B4J275 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC22.05■■□□□ 1.12
TRAV17A0A0B4J275 AC142472.1-201ENST00000612013 1741 ntBASIC22.05■■□□□ 1.12
TRAV17A0A0B4J275 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV17A0A0B4J275 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV17A0A0B4J275 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV17A0A0B4J275 BX255925.1-201ENST00000566954 1854 ntBASIC22.05■■□□□ 1.12
TRAV17A0A0B4J275 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAV17A0A0B4J275 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
TRAV17A0A0B4J275 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV17A0A0B4J275 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.03■■□□□ 1.12
TRAV17A0A0B4J275 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.03■■□□□ 1.12
TRAV17A0A0B4J275 Z92544.1-202ENST00000571933 1220 ntBASIC22.03■■□□□ 1.12
TRAV17A0A0B4J275 AC131212.1-201ENST00000613771 668 ntBASIC22.03■■□□□ 1.12
TRAV17A0A0B4J275 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV17A0A0B4J275 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.03■■□□□ 1.12
TRAV17A0A0B4J275 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC22.03■■□□□ 1.12
TRAV17A0A0B4J275 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
TRAV17A0A0B4J275 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRAV17A0A0B4J275 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TRAV17A0A0B4J275 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAV17A0A0B4J275 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAV17A0A0B4J275 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.01■■□□□ 1.11
TRAV17A0A0B4J275 AC239859.2-201ENST00000444165 318 ntBASIC22.01■■□□□ 1.11
TRAV17A0A0B4J275 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.01■■□□□ 1.11
TRAV17A0A0B4J275 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TRAV17A0A0B4J275 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.01■■□□□ 1.11
TRAV17A0A0B4J275 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
TRAV17A0A0B4J275 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
TRAV17A0A0B4J275 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
TRAV17A0A0B4J275 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22■■□□□ 1.11
TRAV17A0A0B4J275 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
TRAV17A0A0B4J275 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRAV17A0A0B4J275 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRAV17A0A0B4J275 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22■■□□□ 1.11
TRAV17A0A0B4J275 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22■■□□□ 1.11
TRAV17A0A0B4J275 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV17A0A0B4J275 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV17A0A0B4J275 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.99■■□□□ 1.11
TRAV17A0A0B4J275 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV17A0A0B4J275 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms