Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PDXDC1-216ENST00000569715 3775 ntTSL 1 (best) BASIC12.43□□□□□ -0.423e-6■□□□□ 8.5
DDX55Q8NHQ9 PDXDC1-202ENST00000396410 4521 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.443e-6■□□□□ 8.5
DDX55Q8NHQ9 PDXDC1-203ENST00000450288 4171 ntTSL 5 BASIC8.94□□□□□ -0.983e-6■□□□□ 8.5
DDX55Q8NHQ9 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC20.36■□□□□ 0.852e-13■□□□□ 8.5
DDX55Q8NHQ9 HNRNPH1-249ENST00000524180 997 ntTSL 517.2■□□□□ 0.342e-13■□□□□ 8.5
DDX55Q8NHQ9 HNRNPH1-218ENST00000510678 1996 ntTSL 516.47■□□□□ 0.232e-13■□□□□ 8.5
DDX55Q8NHQ9 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.53■□□□□ 0.082e-13■□□□□ 8.5
DDX55Q8NHQ9 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC13.81□□□□□ -0.22e-13■□□□□ 8.5
DDX55Q8NHQ9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21■□□□□ 0.952e-12■□□□□ 8.5
DDX55Q8NHQ9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.91e-6■□□□□ 8.5
DDX55Q8NHQ9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.691e-6■□□□□ 8.5
DDX55Q8NHQ9 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.18■□□□□ 0.022e-12■□□□□ 8.5
DDX55Q8NHQ9 HDAC2-205ENST00000519065 9874 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.252e-12■□□□□ 8.5
DDX55Q8NHQ9 HDAC2-215ENST00000523334 4810 ntTSL 24.21□□□□□ -1.742e-12■□□□□ 8.5
DDX55Q8NHQ9 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.637e-9■□□□□ 8.5
DDX55Q8NHQ9 MAT2A-201ENST00000306434 2819 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.77e-16■□□□□ 8.5
DDX55Q8NHQ9 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.87■□□□□ 0.292e-9■□□□□ 8.5
DDX55Q8NHQ9 TXNDC5-205ENST00000475802 582 ntTSL 213.93□□□□□ -0.182e-9■□□□□ 8.5
DDX55Q8NHQ9 STOM-203ENST00000538954 1257 ntTSL 5 BASIC19.54■□□□□ 0.722e-12■□□□□ 8.5
DDX55Q8NHQ9 STOM-201ENST00000286713 3010 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.072e-12■□□□□ 8.5
DDX55Q8NHQ9 RPS7-205ENST00000462576 907 ntTSL 1 (best)32.96■■■□□ 2.871e-27■□□□□ 8.4
DDX55Q8NHQ9 RPS7-209ENST00000491937 987 ntTSL 232.96■■■□□ 2.871e-27■□□□□ 8.4
DDX55Q8NHQ9 ENTPD6-210ENST00000433417 940 ntTSL 230.06■■■□□ 2.49e-7■□□□□ 8.4
DDX55Q8NHQ9 AC037459.1-201ENST00000450780 977 ntTSL 527.95■■■□□ 2.069e-7■□□□□ 8.4
DDX55Q8NHQ9 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.793e-10■□□□□ 8.4
DDX55Q8NHQ9 ACSS2-213ENST00000480978 844 ntTSL 226.08■■□□□ 1.779e-7■□□□□ 8.4
DDX55Q8NHQ9 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.92■■□□□ 1.744e-9■□□□□ 8.4
DDX55Q8NHQ9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC25.69■■□□□ 1.79e-7■□□□□ 8.4
DDX55Q8NHQ9 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.699e-7■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.08■■□□□ 1.69e-7■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.08■■□□□ 1.69e-7■□□□□ 8.4
DDX55Q8NHQ9 ENTPD6-215ENST00000471478 991 ntTSL 524.66■■□□□ 1.549e-7■□□□□ 8.4
DDX55Q8NHQ9 NUCB1-204ENST00000424608 884 ntAPPRIS ALT2 TSL 524.34■■□□□ 1.499e-7■□□□□ 8.4
DDX55Q8NHQ9 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.476e-8■□□□□ 8.4
DDX55Q8NHQ9 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.2■■□□□ 1.476e-8■□□□□ 8.4
DDX55Q8NHQ9 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.2■■□□□ 1.476e-8■□□□□ 8.4
DDX55Q8NHQ9 TSPAN14-204ENST00000372157 855 ntTSL 524.07■■□□□ 1.446e-8■□□□□ 8.4
DDX55Q8NHQ9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC24.06■■□□□ 1.446e-8■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC24.05■■□□□ 1.449e-7■□□□□ 8.4
DDX55Q8NHQ9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.446e-8■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.429e-7■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC23.77■■□□□ 1.46e-8■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-207ENST00000564818 1653 ntTSL 1 (best)23.64■■□□□ 1.376e-8■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC23.52■■□□□ 1.369e-7■□□□□ 8.4
DDX55Q8NHQ9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.324e-9■□□□□ 8.4
DDX55Q8NHQ9 NUCB1-207ENST00000452087 864 ntTSL 323.04■■□□□ 1.289e-7■□□□□ 8.4
DDX55Q8NHQ9 IFNGR2-206ENST00000545369 966 ntTSL 522.93■■□□□ 1.266e-8■□□□□ 8.4
DDX55Q8NHQ9 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC22.9■■□□□ 1.269e-7■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-206ENST00000563493 1651 ntTSL 522.9■■□□□ 1.266e-8■□□□□ 8.4
DDX55Q8NHQ9 NT5DC2-209ENST00000478091 590 ntTSL 322.79■■□□□ 1.246e-8■□□□□ 8.4
DDX55Q8NHQ9 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.214e-9■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.199e-7■□□□□ 8.4
DDX55Q8NHQ9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.164e-9■□□□□ 8.4
DDX55Q8NHQ9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.164e-9■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-205ENST00000562058 1876 ntTSL 1 (best)22.26■■□□□ 1.156e-8■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.159e-7■□□□□ 8.4
DDX55Q8NHQ9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.22■■□□□ 1.159e-7■□□□□ 8.4
DDX55Q8NHQ9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.119e-7■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.81■■□□□ 1.089e-7■□□□□ 8.4
DDX55Q8NHQ9 TSPAN14-208ENST00000469149 959 ntTSL 221.56■■□□□ 1.046e-8■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.896e-8■□□□□ 8.4
DDX55Q8NHQ9 CD7-205ENST00000582480 564 ntTSL 420.55■□□□□ 0.883e-10■□□□□ 8.4
DDX55Q8NHQ9 AC037459.1-203ENST00000447849 794 ntTSL 520.18■□□□□ 0.829e-7■□□□□ 8.4
DDX55Q8NHQ9 APOE-205ENST00000485628 771 ntTSL 1 (best)18.73■□□□□ 0.595e-31■□□□□ 8.4
DDX55Q8NHQ9 GRN-222ENST00000639447 1314 ntTSL 2 BASIC18.32■□□□□ 0.524e-9■□□□□ 8.4
DDX55Q8NHQ9 TBCD-218ENST00000575132 707 ntTSL 518.19■□□□□ 0.59e-7■□□□□ 8.4
DDX55Q8NHQ9 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.489e-7■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-210ENST00000567998 7948 ntTSL 217.42■□□□□ 0.386e-8■□□□□ 8.4
DDX55Q8NHQ9 RPS7-208ENST00000481006 5429 ntTSL 1 (best)17.33■□□□□ 0.361e-27■□□□□ 8.4
DDX55Q8NHQ9 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.356e-8■□□□□ 8.4
DDX55Q8NHQ9 TMEM41B-201ENST00000299596 1443 ntTSL 1 (best)17.18■□□□□ 0.343e-10■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-220ENST00000622226 6559 nt17.16■□□□□ 0.349e-7■□□□□ 8.4
DDX55Q8NHQ9 ACY1-219ENST00000637102 1488 ntTSL 317.16■□□□□ 0.349e-7■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-213ENST00000448520 894 ntTSL 317.09■□□□□ 0.339e-7■□□□□ 8.4
DDX55Q8NHQ9 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC16.78■□□□□ 0.289e-7■□□□□ 8.4
DDX55Q8NHQ9 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.264e-9■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.256e-8■□□□□ 8.4
DDX55Q8NHQ9 TRAF4-215ENST00000584944 825 ntTSL 216.46■□□□□ 0.236e-8■□□□□ 8.4
DDX55Q8NHQ9 TRAF4-209ENST00000473421 585 ntTSL 316.05■□□□□ 0.166e-8■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.166e-8■□□□□ 8.4
DDX55Q8NHQ9 MAZ-206ENST00000562557 475 ntTSL 316.02■□□□□ 0.169e-7■□□□□ 8.4
DDX55Q8NHQ9 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.153e-10■□□□□ 8.4
DDX55Q8NHQ9 MAZ-204ENST00000561855 672 ntTSL 515.91■□□□□ 0.149e-7■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.64■□□□□ 0.099e-7■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-208ENST00000566189 939 ntTSL 515.6■□□□□ 0.096e-8■□□□□ 8.4
DDX55Q8NHQ9 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC15.58■□□□□ 0.089e-7■□□□□ 8.4
DDX55Q8NHQ9 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.071e-27■□□□□ 8.4
DDX55Q8NHQ9 MAGED2-207ENST00000396224 2026 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.044e-9■□□□□ 8.4
DDX55Q8NHQ9 MAGED2-205ENST00000375060 1798 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.014e-9■□□□□ 8.4
DDX55Q8NHQ9 ENTPD6-216ENST00000481322 414 ntTSL 315.02■□□□□ -09e-7■□□□□ 8.4
DDX55Q8NHQ9 ACSS2-220ENST00000491533 933 ntTSL 514.44□□□□□ -0.19e-7■□□□□ 8.4
DDX55Q8NHQ9 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.139e-7■□□□□ 8.4
DDX55Q8NHQ9 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.186e-8■□□□□ 8.4
DDX55Q8NHQ9 SNRNP200-202ENST00000429650 2637 ntTSL 213.91□□□□□ -0.185e-12■□□□□ 8.4
DDX55Q8NHQ9 PGK1-203ENST00000476531 960 ntTSL 213.15□□□□□ -0.32e-65■□□□□ 8.4
DDX55Q8NHQ9 MAGED2-204ENST00000375058 2048 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.344e-9■□□□□ 8.4
DDX55Q8NHQ9 TMEM41B-202ENST00000524543 3848 ntTSL 212.47□□□□□ -0.413e-10■□□□□ 8.4
DDX55Q8NHQ9 MAGED2-202ENST00000347546 2177 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.424e-9■□□□□ 8.4
DDX55Q8NHQ9 FOXP4-201ENST00000307972 3745 ntTSL 1 (best) BASIC12.22□□□□□ -0.456e-8■□□□□ 8.4
DDX55Q8NHQ9 ACSS2-219ENST00000490464 280 ntTSL 312.21□□□□□ -0.459e-7■□□□□ 8.4
Retrieved 100 of 15,504 protein–RNA pairs in 234.8 ms