RNA–Protein interactions for RNA: ENST00000485628.2

APOE-205, Transcript of apolipoprotein E, humanhuman

TSL 1 (best)

Gene APOE, Length 771 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOE-205ENST00000485628 NISCHQ9Y2I1 1504 aa37.68■■■■□ 3.62
APOE-205ENST00000485628 CCDC180Q9P1Z9 1646 aa33.22■■■□□ 2.91
APOE-205ENST00000485628 ABCC9O60706 1549 aa31.83■■■□□ 2.69
APOE-205ENST00000485628 ZCCHC6Q5VYS8 1495 aaKnown RBP31.52■■■□□ 2.64
APOE-205ENST00000485628 DCAF1Q9Y4B6 1507 aa31.27■■■□□ 2.6
APOE-205ENST00000485628 MYO15BQ96JP2 1530 aa31.2■■■□□ 2.59
APOE-205ENST00000485628 NACADO15069 1562 aa31.09■■■□□ 2.57
APOE-205ENST00000485628 DCAF8L2P0C7V8 631 aa30.98■■■□□ 2.55
APOE-205ENST00000485628 RB1CC1Q8TDY2 1594 aa30.92■■■□□ 2.54
APOE-205ENST00000485628 UNC13AQ9UPW8 1703 aa30.3■■■□□ 2.44
APOE-205ENST00000485628 SCRIBQ14160 1630 aa30.25■■■□□ 2.43
APOE-205ENST00000485628 BICRAQ9NZM4 1560 aa30.08■■■□□ 2.41
APOE-205ENST00000485628 SHROOM4Q9ULL8 1493 aa29.93■■■□□ 2.38
APOE-205ENST00000485628 PABPN1Q86U42 306 aaKnown RBP eCLIP29.83■■■□□ 2.37
APOE-205ENST00000485628 CECR2Q9BXF3 1484 aa29.28■■■□□ 2.28
APOE-205ENST00000485628 EIF4G1Q04637 1599 aaKnown RBP29.16■■■□□ 2.26
APOE-205ENST00000485628 BAZ1AQ9NRL2 1556 aaPredicted RBP29.11■■■□□ 2.25
APOE-205ENST00000485628 SMARCA4P51532 1647 aa29.08■■■□□ 2.25
APOE-205ENST00000485628 MROH2BQ7Z745 1585 aa29.04■■■□□ 2.24
APOE-205ENST00000485628 RSF1Q96T23 1441 aaPredicted RBP28.94■■■□□ 2.22
APOE-205ENST00000485628 CC2D2AQ9P2K1 1620 aa28.88■■■□□ 2.21
APOE-205ENST00000485628 PEG3Q9GZU2 1588 aa28.88■■■□□ 2.21
APOE-205ENST00000485628 DNAJC5BQ9UF47 199 aa28.8■■■□□ 2.2
APOE-205ENST00000485628 ATAD2BQ9ULI0 1458 aa28.79■■■□□ 2.2
APOE-205ENST00000485628 SMARCA2P51531 1590 aa28.75■■■□□ 2.19
APOE-205ENST00000485628 WIZO95785 1651 aa28.73■■■□□ 2.19
APOE-205ENST00000485628 NCAPD3P42695 1498 aa28.72■■■□□ 2.19
APOE-205ENST00000485628 HMGXB3Q12766 1538 aa28.6■■■□□ 2.17
APOE-205ENST00000485628 BAZ1BQ9UIG0 1483 aaKnown RBP28.5■■■□□ 2.15
APOE-205ENST00000485628 SUPT5HO00267 1087 aaKnown RBP28.47■■■□□ 2.15
APOE-205ENST00000485628 TOP2AP11388 1531 aaKnown RBP28.46■■■□□ 2.15
APOE-205ENST00000485628 CCDC88BA6NC98 1476 aa28.15■■■□□ 2.1
APOE-205ENST00000485628 CADPSQ9ULU8 1353 aa27.86■■■□□ 2.05
APOE-205ENST00000485628 CFTRP13569 1480 aa27.86■■■□□ 2.05
APOE-205ENST00000485628 LAMC3Q9Y6N6 1575 aa27.81■■■□□ 2.04
APOE-205ENST00000485628 NESP48681 1621 aa27.78■■■□□ 2.04
APOE-205ENST00000485628 PRDM2Q13029 1718 aa27.67■■■□□ 2.02
APOE-205ENST00000485628 PDS5BQ9NTI5 1447 aa27.56■■■□□ 2
APOE-205ENST00000485628 FANCD2Q9BXW9 1451 aa27.51■■□□□ 1.99
APOE-205ENST00000485628 KIF21AQ7Z4S6 1674 aa27.45■■□□□ 1.98
APOE-205ENST00000485628 CEP164Q9UPV0 1460 aa27.38■■□□□ 1.97
APOE-205ENST00000485628 ERCC6Q03468 1493 aa27.32■■□□□ 1.96
APOE-205ENST00000485628 THOC2Q8NI27 1593 aaKnown RBP27.26■■□□□ 1.95
APOE-205ENST00000485628 MRC2Q9UBG0 1479 aa27.25■■□□□ 1.95
APOE-205ENST00000485628 URB2Q14146 1524 aaKnown RBP27.24■■□□□ 1.95
APOE-205ENST00000485628 ABCC8Q09428 1581 aa27.23■■□□□ 1.95
APOE-205ENST00000485628 WRNQ14191 1432 aaPredicted RBP eCLIP27.2■■□□□ 1.94
APOE-205ENST00000485628 CUX1P39880 1505 aa27.2■■□□□ 1.94
APOE-205ENST00000485628 WDR62O43379 1518 aa27.19■■□□□ 1.94
APOE-205ENST00000485628 DNMBPQ6XZF7 1577 aa27.17■■□□□ 1.94
APOE-205ENST00000485628 TOPBP1Q92547 1522 aa27.16■■□□□ 1.94
APOE-205ENST00000485628 SYNJ1O43426 1573 aa27.13■■□□□ 1.93
APOE-205ENST00000485628 TOP2BQ02880 1626 aa27.12■■□□□ 1.93
APOE-205ENST00000485628 BIVM-ERCC5R4GMW8 1640 aa27.12■■□□□ 1.93
APOE-205ENST00000485628 CHIC1Q5VXU3 224 aa27.06■■□□□ 1.92
APOE-205ENST00000485628 POLA1P09884 1462 aaPredicted RBP26.98■■□□□ 1.91
APOE-205ENST00000485628 CUX2O14529 1486 aa26.96■■□□□ 1.91
APOE-205ENST00000485628 FGD5Q6ZNL6 1462 aa26.96■■□□□ 1.91
APOE-205ENST00000485628 TRIM41Q8WV44 630 aa26.89■■□□□ 1.9
APOE-205ENST00000485628 TARBP1Q13395 1621 aaKnown RBP26.87■■□□□ 1.89
APOE-205ENST00000485628 SOGA1O94964 1423 aa26.84■■□□□ 1.89
APOE-205ENST00000485628 IFT140Q96RY7 1462 aa26.82■■□□□ 1.88
APOE-205ENST00000485628 RAD54L2Q9Y4B4 1467 aa26.82■■□□□ 1.88
APOE-205ENST00000485628 ABCA10Q8WWZ4 1543 aa26.8■■□□□ 1.88
APOE-205ENST00000485628 WDR97A6NE52 1622 aa26.78■■□□□ 1.88
APOE-205ENST00000485628 ZNF608Q9ULD9 1512 aaPredicted RBP26.67■■□□□ 1.86
APOE-205ENST00000485628 ABCA5Q8WWZ7 1642 aa26.63■■□□□ 1.85
APOE-205ENST00000485628 TDRD9Q8NDG6 1382 aaKnown RBP26.6■■□□□ 1.85
APOE-205ENST00000485628 AQRO60306 1485 aaKnown RBP eCLIP26.57■■□□□ 1.843e-11■□□□□ 10.2
APOE-205ENST00000485628 RUSC2Q8N2Y8 1516 aa26.57■■□□□ 1.84
APOE-205ENST00000485628 KIF27Q86VH2 1401 aa26.56■■□□□ 1.84
APOE-205ENST00000485628 EIF4G3O43432 1585 aaKnown RBP26.56■■□□□ 1.84
APOE-205ENST00000485628 GAPVD1Q14C86 1478 aa26.55■■□□□ 1.84
APOE-205ENST00000485628 EEA1Q15075 1411 aa26.48■■□□□ 1.83
APOE-205ENST00000485628 IGF1RP08069 1367 aa26.48■■□□□ 1.83
APOE-205ENST00000485628 ERICH3Q5RHP9 1530 aa26.47■■□□□ 1.83
APOE-205ENST00000485628 GRIN2BQ13224 1484 aa26.46■■□□□ 1.83
APOE-205ENST00000485628 PBRM1Q86U86 1689 aa26.44■■□□□ 1.82
APOE-205ENST00000485628 CSRNP3Q8WYN3 585 aa26.35■■□□□ 1.81
APOE-205ENST00000485628 MAGI1Q96QZ7 1491 aaPredicted RBP26.35■■□□□ 1.81
APOE-205ENST00000485628 SNAPC4Q5SXM2 1469 aa26.32■■□□□ 1.8
APOE-205ENST00000485628 PRXQ9BXM0 1461 aa26.31■■□□□ 1.8
APOE-205ENST00000485628 CUL7Q14999 1698 aa26.3■■□□□ 1.8
APOE-205ENST00000485628 ADAMTS12P58397 1594 aa26.29■■□□□ 1.8
APOE-205ENST00000485628 CARMIL1Q5VZK9 1371 aa26.27■■□□□ 1.8
APOE-205ENST00000485628 FHAD1B1AJZ9 1412 aa26.27■■□□□ 1.8
APOE-205ENST00000485628 FAM9AQ8IZU1 332 aaPredicted RBP26.24■■□□□ 1.79
APOE-205ENST00000485628 SYNJ2O15056 1496 aa26.23■■□□□ 1.79
APOE-205ENST00000485628 KIF21BO75037 1637 aa26.18■■□□□ 1.78
APOE-205ENST00000485628 RAPGEF2Q9Y4G8 1499 aa26.17■■□□□ 1.78
APOE-205ENST00000485628 GRIN2AQ12879 1464 aa26.13■■□□□ 1.77
APOE-205ENST00000485628 CHD1O14646 1710 aa26.11■■□□□ 1.77
APOE-205ENST00000485628 CHMP7Q8WUX9 453 aaPredicted RBP26.08■■□□□ 1.77
APOE-205ENST00000485628 NUP160Q12769 1436 aa26.05■■□□□ 1.76
APOE-205ENST00000485628 GOLGA3Q08378 1498 aa26.02■■□□□ 1.76
APOE-205ENST00000485628 CEP170Q5SW79 1584 aa25.99■■□□□ 1.75
APOE-205ENST00000485628 FBLN2P98095 1184 aa25.99■■□□□ 1.75
APOE-205ENST00000485628 KIAA0586Q9BVV6 1533 aa25.92■■□□□ 1.74
APOE-205ENST00000485628 CLASP1Q7Z460 1538 aa25.9■■□□□ 1.74
APOE-205ENST00000485628 LOC105371045A0A1W2PR82 267 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms