Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.31■□□□□ 0.36
SHOX2O60902 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.31■□□□□ 0.36
SHOX2O60902 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SHOX2O60902 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SHOX2O60902 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SHOX2O60902 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.3■□□□□ 0.36
SHOX2O60902 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.3■□□□□ 0.36
SHOX2O60902 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SHOX2O60902 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.3■□□□□ 0.36
SHOX2O60902 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.3■□□□□ 0.36
SHOX2O60902 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.3■□□□□ 0.36
SHOX2O60902 AL353708.3-201ENST00000610272 989 ntBASIC17.3■□□□□ 0.36
SHOX2O60902 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.3■□□□□ 0.36
SHOX2O60902 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SHOX2O60902 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.3■□□□□ 0.36
SHOX2O60902 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SHOX2O60902 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SHOX2O60902 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHOX2O60902 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SHOX2O60902 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SHOX2O60902 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 PPT1-215ENST00000641471 2368 ntBASIC17.29■□□□□ 0.36
SHOX2O60902 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.29■□□□□ 0.36
SHOX2O60902 KSR1P1-201ENST00000446298 240 ntBASIC17.29■□□□□ 0.36
SHOX2O60902 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.29■□□□□ 0.36
SHOX2O60902 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SHOX2O60902 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.29■□□□□ 0.36
SHOX2O60902 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 AC124016.1-201ENST00000609552 612 ntBASIC17.29■□□□□ 0.36
SHOX2O60902 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 AC138035.3-201ENST00000622706 2791 ntBASIC17.29■□□□□ 0.36
SHOX2O60902 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.29■□□□□ 0.36
SHOX2O60902 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SHOX2O60902 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHOX2O60902 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SHOX2O60902 EGFEM1P-202ENST00000431685 1563 ntBASIC17.28■□□□□ 0.36
SHOX2O60902 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHOX2O60902 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHOX2O60902 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHOX2O60902 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 AP005117.1-202ENST00000581724 1908 ntBASIC17.28■□□□□ 0.36
SHOX2O60902 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.28■□□□□ 0.36
SHOX2O60902 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.28■□□□□ 0.36
SHOX2O60902 CICP13-201ENST00000422015 2789 ntBASIC17.28■□□□□ 0.36
SHOX2O60902 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SHOX2O60902 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.28■□□□□ 0.36
SHOX2O60902 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHOX2O60902 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.28■□□□□ 0.36
SHOX2O60902 AP002490.2-201ENST00000524791 560 ntBASIC17.28■□□□□ 0.36
SHOX2O60902 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.28■□□□□ 0.36
SHOX2O60902 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms