Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMA1Q9UHB6 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 AP005901.3-202ENST00000581653 237 ntBASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMA1Q9UHB6 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 PCDHB17P-201ENST00000539533 2393 ntBASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 LINC01238-205ENST00000567549 1107 ntBASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMA1Q9UHB6 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 KLF4P1-201ENST00000412782 1185 ntBASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms