RNA–Protein interactions for RNA: ENST00000445866.6

SGCE-206, Transcript of sarcoglycan epsilon, humanhuman

TSL 5 BASIC

Gene SGCE, Length 1,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-206ENST00000445866 NISCHQ9Y2I1 1504 aa40.69■■■■■ 4.1
SGCE-206ENST00000445866 CCDC180Q9P1Z9 1646 aa35.6■■■■□ 3.29
SGCE-206ENST00000445866 ABCC9O60706 1549 aa34.61■■■■□ 3.13
SGCE-206ENST00000445866 DCAF8L2P0C7V8 631 aa34.16■■■■□ 3.06
SGCE-206ENST00000445866 ZCCHC6Q5VYS8 1495 aaKnown RBP33.97■■■■□ 3.03
SGCE-206ENST00000445866 DCAF1Q9Y4B6 1507 aa33.6■■■□□ 2.97
SGCE-206ENST00000445866 NACADO15069 1562 aa33.52■■■□□ 2.96
SGCE-206ENST00000445866 MYO15BQ96JP2 1530 aa33.49■■■□□ 2.95
SGCE-206ENST00000445866 RB1CC1Q8TDY2 1594 aa33.39■■■□□ 2.94
SGCE-206ENST00000445866 SHROOM4Q9ULL8 1493 aa32.79■■■□□ 2.84
SGCE-206ENST00000445866 SCRIBQ14160 1630 aa32.74■■■□□ 2.83
SGCE-206ENST00000445866 PABPN1Q86U42 306 aaKnown RBP eCLIP32.66■■■□□ 2.82
SGCE-206ENST00000445866 UNC13AQ9UPW8 1703 aa32.35■■■□□ 2.77
SGCE-206ENST00000445866 BICRAQ9NZM4 1560 aa32.34■■■□□ 2.77
SGCE-206ENST00000445866 CECR2Q9BXF3 1484 aa31.71■■■□□ 2.67
SGCE-206ENST00000445866 EIF4G1Q04637 1599 aaKnown RBP31.47■■■□□ 2.63
SGCE-206ENST00000445866 BAZ1AQ9NRL2 1556 aaPredicted RBP31.44■■■□□ 2.62
SGCE-206ENST00000445866 MROH2BQ7Z745 1585 aa31.39■■■□□ 2.62
SGCE-206ENST00000445866 DNAJC5BQ9UF47 199 aa31.37■■■□□ 2.61
SGCE-206ENST00000445866 RSF1Q96T23 1441 aaPredicted RBP31.35■■■□□ 2.61
SGCE-206ENST00000445866 SMARCA4P51532 1647 aa31.32■■■□□ 2.6
SGCE-206ENST00000445866 SUPT5HO00267 1087 aaKnown RBP31.28■■■□□ 2.6
SGCE-206ENST00000445866 CC2D2AQ9P2K1 1620 aa31.18■■■□□ 2.58
SGCE-206ENST00000445866 ATAD2BQ9ULI0 1458 aa31.16■■■□□ 2.58
SGCE-206ENST00000445866 SMARCA2P51531 1590 aa31.05■■■□□ 2.56
SGCE-206ENST00000445866 NCAPD3P42695 1498 aa31.04■■■□□ 2.56
SGCE-206ENST00000445866 PEG3Q9GZU2 1588 aa30.98■■■□□ 2.55
SGCE-206ENST00000445866 WIZO95785 1651 aa30.98■■■□□ 2.55
SGCE-206ENST00000445866 BAZ1BQ9UIG0 1483 aaKnown RBP30.91■■■□□ 2.54
SGCE-206ENST00000445866 HMGXB3Q12766 1538 aa30.79■■■□□ 2.52
SGCE-206ENST00000445866 TOP2AP11388 1531 aaKnown RBP30.7■■■□□ 2.51
SGCE-206ENST00000445866 CCDC88BA6NC98 1476 aa30.49■■■□□ 2.47
SGCE-206ENST00000445866 CADPSQ9ULU8 1353 aa30.26■■■□□ 2.43
SGCE-206ENST00000445866 CFTRP13569 1480 aa30.12■■■□□ 2.41
SGCE-206ENST00000445866 NESP48681 1621 aa30.11■■■□□ 2.41
SGCE-206ENST00000445866 LAMC3Q9Y6N6 1575 aa29.97■■■□□ 2.39
SGCE-206ENST00000445866 PDS5BQ9NTI5 1447 aa29.96■■■□□ 2.39
SGCE-206ENST00000445866 FANCD2Q9BXW9 1451 aa29.83■■■□□ 2.37
SGCE-206ENST00000445866 ERCC6Q03468 1493 aa29.79■■■□□ 2.36
SGCE-206ENST00000445866 CEP164Q9UPV0 1460 aa29.69■■■□□ 2.34
SGCE-206ENST00000445866 WRNQ14191 1432 aaPredicted RBP eCLIP29.52■■■□□ 2.32
SGCE-206ENST00000445866 MRC2Q9UBG0 1479 aa29.52■■■□□ 2.32
SGCE-206ENST00000445866 CHIC1Q5VXU3 224 aa29.5■■■□□ 2.31
SGCE-206ENST00000445866 KIF21AQ7Z4S6 1674 aa29.5■■■□□ 2.31
SGCE-206ENST00000445866 ABCC8Q09428 1581 aa29.49■■■□□ 2.31
SGCE-206ENST00000445866 TRIM41Q8WV44 630 aa29.48■■■□□ 2.31
SGCE-206ENST00000445866 PRDM2Q13029 1718 aa29.48■■■□□ 2.31
SGCE-206ENST00000445866 URB2Q14146 1524 aaKnown RBP29.45■■■□□ 2.31
SGCE-206ENST00000445866 CUX1P39880 1505 aa29.38■■■□□ 2.29
SGCE-206ENST00000445866 TOPBP1Q92547 1522 aa29.38■■■□□ 2.29
SGCE-206ENST00000445866 DNMBPQ6XZF7 1577 aa29.31■■■□□ 2.28
SGCE-206ENST00000445866 WDR62O43379 1518 aa29.3■■■□□ 2.28
SGCE-206ENST00000445866 THOC2Q8NI27 1593 aaKnown RBP29.28■■■□□ 2.28
SGCE-206ENST00000445866 SYNJ1O43426 1573 aa29.26■■■□□ 2.28
SGCE-206ENST00000445866 TOP2BQ02880 1626 aa29.22■■■□□ 2.27
SGCE-206ENST00000445866 SOGA1O94964 1423 aa29.21■■■□□ 2.27
SGCE-206ENST00000445866 FGD5Q6ZNL6 1462 aa29.21■■■□□ 2.27
SGCE-206ENST00000445866 POLA1P09884 1462 aaPredicted RBP29.19■■■□□ 2.26
SGCE-206ENST00000445866 CUX2O14529 1486 aa29.14■■■□□ 2.25
SGCE-206ENST00000445866 RAD54L2Q9Y4B4 1467 aa29.14■■■□□ 2.25
SGCE-206ENST00000445866 BIVM-ERCC5R4GMW8 1640 aa29.11■■■□□ 2.25
SGCE-206ENST00000445866 IFT140Q96RY7 1462 aa29.06■■■□□ 2.24
SGCE-206ENST00000445866 TDRD9Q8NDG6 1382 aaKnown RBP29.02■■■□□ 2.24
SGCE-206ENST00000445866 ABCA10Q8WWZ4 1543 aa28.94■■■□□ 2.22
SGCE-206ENST00000445866 FAM9AQ8IZU1 332 aaPredicted RBP28.92■■■□□ 2.22
SGCE-206ENST00000445866 ZNF608Q9ULD9 1512 aaPredicted RBP28.91■■■□□ 2.22
SGCE-206ENST00000445866 AQRO60306 1485 aaKnown RBP eCLIP28.91■■■□□ 2.22
SGCE-206ENST00000445866 TARBP1Q13395 1621 aaKnown RBP28.89■■■□□ 2.22
SGCE-206ENST00000445866 KIF27Q86VH2 1401 aa28.88■■■□□ 2.21
SGCE-206ENST00000445866 RUSC2Q8N2Y8 1516 aa28.81■■■□□ 2.2
SGCE-206ENST00000445866 GAPVD1Q14C86 1478 aa28.81■■■□□ 2.2
SGCE-206ENST00000445866 CSRNP3Q8WYN3 585 aa28.77■■■□□ 2.2
SGCE-206ENST00000445866 IGF1RP08069 1367 aa28.76■■■□□ 2.19
SGCE-206ENST00000445866 GRIN2BQ13224 1484 aa28.7■■■□□ 2.19
SGCE-206ENST00000445866 EEA1Q15075 1411 aa28.7■■■□□ 2.18
SGCE-206ENST00000445866 WDR97A6NE52 1622 aa28.64■■■□□ 2.18
SGCE-206ENST00000445866 EIF4G3O43432 1585 aaKnown RBP28.63■■■□□ 2.17
SGCE-206ENST00000445866 ABCA5Q8WWZ7 1642 aa28.61■■■□□ 2.17
SGCE-206ENST00000445866 FBLN2P98095 1184 aa28.61■■■□□ 2.17
SGCE-206ENST00000445866 CARMIL1Q5VZK9 1371 aa28.59■■■□□ 2.17
SGCE-206ENST00000445866 CHMP7Q8WUX9 453 aaPredicted RBP28.58■■■□□ 2.17
SGCE-206ENST00000445866 ERICH3Q5RHP9 1530 aa28.57■■■□□ 2.16
SGCE-206ENST00000445866 SNAPC4Q5SXM2 1469 aa28.56■■■□□ 2.16
SGCE-206ENST00000445866 EHMT2Q96KQ7 1210 aa28.54■■■□□ 2.16
SGCE-206ENST00000445866 FHAD1B1AJZ9 1412 aa28.5■■■□□ 2.15
SGCE-206ENST00000445866 MAGI1Q96QZ7 1491 aaPredicted RBP28.49■■■□□ 2.15
SGCE-206ENST00000445866 PRXQ9BXM0 1461 aa28.44■■■□□ 2.14
SGCE-206ENST00000445866 SYNJ2O15056 1496 aa28.41■■■□□ 2.14
SGCE-206ENST00000445866 RAPGEF2Q9Y4G8 1499 aa28.4■■■□□ 2.14
SGCE-206ENST00000445866 LOC105371045A0A1W2PR82 267 aa28.39■■■□□ 2.14
SGCE-206ENST00000445866 PBRM1Q86U86 1689 aa28.38■■■□□ 2.13
SGCE-206ENST00000445866 UBTFP17480 764 aaKnown RBP28.37■■■□□ 2.13
SGCE-206ENST00000445866 ADAMTS12P58397 1594 aa28.33■■■□□ 2.13
SGCE-206ENST00000445866 OSCARQ8IYS5 282 aa28.32■■■□□ 2.12
SGCE-206ENST00000445866 CUL7Q14999 1698 aa28.31■■■□□ 2.12
SGCE-206ENST00000445866 GRIN2AQ12879 1464 aa28.29■■■□□ 2.12
SGCE-206ENST00000445866 GOLGA3Q08378 1498 aa28.23■■■□□ 2.11
SGCE-206ENST00000445866 KIF21BO75037 1637 aa28.19■■■□□ 2.1
SGCE-206ENST00000445866 NUP160Q12769 1436 aa28.15■■■□□ 2.1
SGCE-206ENST00000445866 RANGAP1P46060 587 aaPredicted RBP28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms