Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC39Q9UFE4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 FAM210CP-201ENST00000445714 574 ntBASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 AL136038.3-201ENST00000561909 1096 ntBASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC39Q9UFE4 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC39Q9UFE4 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 ANKRD26P3-201ENST00000454044 2748 ntBASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 GUSBP12-201ENST00000513727 720 ntBASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC39Q9UFE4 PCDHB17P-201ENST00000539533 2393 ntBASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 185.4 ms