Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SOX2P48431 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC15.28■□□□□ 0.04
SOX2P48431 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX2P48431 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.28■□□□□ 0.04
SOX2P48431 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX2P48431 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
SOX2P48431 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX2P48431 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX2P48431 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX2P48431 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX2P48431 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.27■□□□□ 0.04
SOX2P48431 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX2P48431 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX2P48431 MIR4497-201ENST00000583208 89 ntBASIC15.27■□□□□ 0.04
SOX2P48431 AC140113.3-201ENST00000605663 199 ntBASIC15.27■□□□□ 0.04
SOX2P48431 DOC2GP-204ENST00000639052 2548 ntBASIC15.27■□□□□ 0.03
SOX2P48431 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
SOX2P48431 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.27■□□□□ 0.03
SOX2P48431 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
SOX2P48431 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.27■□□□□ 0.03
SOX2P48431 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.27■□□□□ 0.03
SOX2P48431 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
SOX2P48431 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
SOX2P48431 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.27■□□□□ 0.03
SOX2P48431 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.27■□□□□ 0.03
SOX2P48431 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.03
SOX2P48431 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX2P48431 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SOX2P48431 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX2P48431 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 RNF216P1-203ENST00000404404 2427 ntBASIC15.26■□□□□ 0.03
SOX2P48431 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX2P48431 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX2P48431 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX2P48431 AC093525.9-201ENST00000624961 1746 ntBASIC15.26■□□□□ 0.03
SOX2P48431 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SOX2P48431 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX2P48431 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX2P48431 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX2P48431 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX2P48431 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX2P48431 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX2P48431 PPOX-214ENST00000535223 664 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX2P48431 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX2P48431 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
SOX2P48431 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX2P48431 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SOX2P48431 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
SOX2P48431 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.26■□□□□ 0.03
SOX2P48431 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SOX2P48431 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX2P48431 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX2P48431 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.26■□□□□ 0.03
SOX2P48431 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms