RNA–Protein interactions for RNA: ENST00000442010.2

HMGB3P22-201, Transcript of high mobility group box 3 pseudogene 22, humanhuman

TSL 2 BASIC

Gene HMGB3P22, Length 597 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P22-201ENST00000442010 NISCHQ9Y2I1 1504 aa46.94■■■■■ 5.1
HMGB3P22-201ENST00000442010 CCDC180Q9P1Z9 1646 aa41.96■■■■■ 4.31
HMGB3P22-201ENST00000442010 ABCC9O60706 1549 aa41.38■■■■■ 4.21
HMGB3P22-201ENST00000442010 RB1CC1Q8TDY2 1594 aa39.64■■■■□ 3.94
HMGB3P22-201ENST00000442010 NACADO15069 1562 aa39.51■■■■□ 3.92
HMGB3P22-201ENST00000442010 DCAF8L2P0C7V8 631 aa39.23■■■■□ 3.87
HMGB3P22-201ENST00000442010 MYO15BQ96JP2 1530 aa39.17■■■■□ 3.86
HMGB3P22-201ENST00000442010 ZCCHC6Q5VYS8 1495 aaKnown RBP39.02■■■■□ 3.84
HMGB3P22-201ENST00000442010 UNC13AQ9UPW8 1703 aa38.89■■■■□ 3.82
HMGB3P22-201ENST00000442010 DCAF1Q9Y4B6 1507 aa38.84■■■■□ 3.81
HMGB3P22-201ENST00000442010 PABPN1Q86U42 306 aaKnown RBP eCLIP38.57■■■■□ 3.76
HMGB3P22-201ENST00000442010 BICRAQ9NZM4 1560 aa38.54■■■■□ 3.76
HMGB3P22-201ENST00000442010 DNAJC5BQ9UF47 199 aa38.43■■■■□ 3.74
HMGB3P22-201ENST00000442010 SCRIBQ14160 1630 aa38.19■■■■□ 3.7
HMGB3P22-201ENST00000442010 SHROOM4Q9ULL8 1493 aa38.03■■■■□ 3.68
HMGB3P22-201ENST00000442010 EIF4G1Q04637 1599 aaKnown RBP37.51■■■■□ 3.59
HMGB3P22-201ENST00000442010 CC2D2AQ9P2K1 1620 aa37.47■■■■□ 3.59
HMGB3P22-201ENST00000442010 CECR2Q9BXF3 1484 aa37.23■■■■□ 3.55
HMGB3P22-201ENST00000442010 SMARCA4P51532 1647 aa36.52■■■■□ 3.44
HMGB3P22-201ENST00000442010 NCAPD3P42695 1498 aa36.47■■■■□ 3.43
HMGB3P22-201ENST00000442010 ATAD2BQ9ULI0 1458 aa36.42■■■■□ 3.42
HMGB3P22-201ENST00000442010 BAZ1AQ9NRL2 1556 aaPredicted RBP36.39■■■■□ 3.42
HMGB3P22-201ENST00000442010 SMARCA2P51531 1590 aa36.33■■■■□ 3.41
HMGB3P22-201ENST00000442010 HMGXB3Q12766 1538 aa36.25■■■■□ 3.39
HMGB3P22-201ENST00000442010 PEG3Q9GZU2 1588 aa36.21■■■■□ 3.39
HMGB3P22-201ENST00000442010 MROH2BQ7Z745 1585 aa36.17■■■■□ 3.38
HMGB3P22-201ENST00000442010 BAZ1BQ9UIG0 1483 aaKnown RBP36.05■■■■□ 3.36
HMGB3P22-201ENST00000442010 WIZO95785 1651 aa35.78■■■■□ 3.32
HMGB3P22-201ENST00000442010 NESP48681 1621 aa35.72■■■■□ 3.31
HMGB3P22-201ENST00000442010 ERCC6Q03468 1493 aa35.65■■■■□ 3.3
HMGB3P22-201ENST00000442010 RSF1Q96T23 1441 aaPredicted RBP35.58■■■■□ 3.29
HMGB3P22-201ENST00000442010 LAMC3Q9Y6N6 1575 aa35.57■■■■□ 3.28
HMGB3P22-201ENST00000442010 CUX2O14529 1486 aa35.49■■■■□ 3.27
HMGB3P22-201ENST00000442010 CADPSQ9ULU8 1353 aa35.35■■■■□ 3.25
HMGB3P22-201ENST00000442010 KIF21AQ7Z4S6 1674 aa35.34■■■■□ 3.25
HMGB3P22-201ENST00000442010 TOP2AP11388 1531 aaKnown RBP35.34■■■■□ 3.25
HMGB3P22-201ENST00000442010 THOC2Q8NI27 1593 aaKnown RBP35.32■■■■□ 3.24
HMGB3P22-201ENST00000442010 PDS5BQ9NTI5 1447 aa35.28■■■■□ 3.24
HMGB3P22-201ENST00000442010 CFTRP13569 1480 aa35.08■■■■□ 3.21
HMGB3P22-201ENST00000442010 MRC2Q9UBG0 1479 aa34.98■■■■□ 3.19
HMGB3P22-201ENST00000442010 FANCD2Q9BXW9 1451 aa34.94■■■■□ 3.18
HMGB3P22-201ENST00000442010 WDR62O43379 1518 aa34.92■■■■□ 3.18
HMGB3P22-201ENST00000442010 CCDC88BA6NC98 1476 aa34.92■■■■□ 3.18
HMGB3P22-201ENST00000442010 CEP164Q9UPV0 1460 aa34.92■■■■□ 3.18
HMGB3P22-201ENST00000442010 DNAJC5Q9H3Z4 198 aa34.91■■■■□ 3.18
HMGB3P22-201ENST00000442010 PRDM2Q13029 1718 aa34.87■■■■□ 3.17
HMGB3P22-201ENST00000442010 URB2Q14146 1524 aaKnown RBP34.65■■■■□ 3.14
HMGB3P22-201ENST00000442010 TOPBP1Q92547 1522 aa34.36■■■■□ 3.09
HMGB3P22-201ENST00000442010 ABCC8Q09428 1581 aa34.3■■■■□ 3.08
HMGB3P22-201ENST00000442010 DNMBPQ6XZF7 1577 aa34.28■■■■□ 3.08
HMGB3P22-201ENST00000442010 SUPT5HO00267 1087 aaKnown RBP34.24■■■■□ 3.07
HMGB3P22-201ENST00000442010 IFT140Q96RY7 1462 aa34.22■■■■□ 3.07
HMGB3P22-201ENST00000442010 ZNF608Q9ULD9 1512 aaPredicted RBP34.14■■■■□ 3.06
HMGB3P22-201ENST00000442010 TARBP1Q13395 1621 aaKnown RBP34.06■■■■□ 3.04
HMGB3P22-201ENST00000442010 POLA1P09884 1462 aaPredicted RBP34.04■■■■□ 3.04
HMGB3P22-201ENST00000442010 EIF4G3O43432 1585 aaKnown RBP33.99■■■■□ 3.03
HMGB3P22-201ENST00000442010 CUX1P39880 1505 aa33.95■■■■□ 3.03
HMGB3P22-201ENST00000442010 OSCARQ8IYS5 282 aa33.9■■■■□ 3.02
HMGB3P22-201ENST00000442010 FGD5Q6ZNL6 1462 aa33.88■■■■□ 3.01
HMGB3P22-201ENST00000442010 RAD54L2Q9Y4B4 1467 aa33.88■■■■□ 3.01
HMGB3P22-201ENST00000442010 AQRO60306 1485 aaKnown RBP eCLIP33.87■■■■□ 3.01
HMGB3P22-201ENST00000442010 SOGA1O94964 1423 aa33.85■■■■□ 3.01
HMGB3P22-201ENST00000442010 WDR97A6NE52 1622 aa33.75■■■□□ 2.99
HMGB3P22-201ENST00000442010 TDRD9Q8NDG6 1382 aaKnown RBP33.71■■■□□ 2.99
HMGB3P22-201ENST00000442010 CHD1O14646 1710 aa33.69■■■□□ 2.98
HMGB3P22-201ENST00000442010 BIVM-ERCC5R4GMW8 1640 aa33.58■■■□□ 2.97
HMGB3P22-201ENST00000442010 ABCA10Q8WWZ4 1543 aa33.55■■■□□ 2.96
HMGB3P22-201ENST00000442010 TOP2BQ02880 1626 aa33.55■■■□□ 2.96
HMGB3P22-201ENST00000442010 SYNJ1O43426 1573 aa33.53■■■□□ 2.96
HMGB3P22-201ENST00000442010 SNAPC4Q5SXM2 1469 aa33.53■■■□□ 2.96
HMGB3P22-201ENST00000442010 WRNQ14191 1432 aaPredicted RBP eCLIP33.53■■■□□ 2.96
HMGB3P22-201ENST00000442010 GRIN2BQ13224 1484 aa33.51■■■□□ 2.96
HMGB3P22-201ENST00000442010 PBRM1Q86U86 1689 aa33.49■■■□□ 2.95
HMGB3P22-201ENST00000442010 RIMBP3CA6NJZ7 1639 aa33.49■■■□□ 2.95
HMGB3P22-201ENST00000442010 RIMBP3BA6NNM3 1639 aa33.49■■■□□ 2.95
HMGB3P22-201ENST00000442010 ABCA5Q8WWZ7 1642 aa33.49■■■□□ 2.95
HMGB3P22-201ENST00000442010 RIMBP3Q9UFD9 1639 aa33.49■■■□□ 2.95
HMGB3P22-201ENST00000442010 TRIM41Q8WV44 630 aa33.48■■■□□ 2.95
HMGB3P22-201ENST00000442010 MAGI1Q96QZ7 1491 aaPredicted RBP33.48■■■□□ 2.95
HMGB3P22-201ENST00000442010 GAPVD1Q14C86 1478 aa33.46■■■□□ 2.95
HMGB3P22-201ENST00000442010 FBLN2P98095 1184 aa33.44■■■□□ 2.94
HMGB3P22-201ENST00000442010 ARHGEF11O15085 1522 aa33.41■■■□□ 2.94
HMGB3P22-201ENST00000442010 SYNJ2O15056 1496 aa33.36■■■□□ 2.93
HMGB3P22-201ENST00000442010 CHMP7Q8WUX9 453 aaPredicted RBP33.31■■■□□ 2.92
HMGB3P22-201ENST00000442010 CLASP1Q7Z460 1538 aa33.29■■■□□ 2.92
HMGB3P22-201ENST00000442010 ADAMTS12P58397 1594 aa33.17■■■□□ 2.9
HMGB3P22-201ENST00000442010 ERICH3Q5RHP9 1530 aa33.13■■■□□ 2.89
HMGB3P22-201ENST00000442010 ARAP1Q96P48 1450 aa33.12■■■□□ 2.89
HMGB3P22-201ENST00000442010 GRIN2AQ12879 1464 aa33.1■■■□□ 2.89
HMGB3P22-201ENST00000442010 CYB5RLQ6IPT4 315 aa33.06■■■□□ 2.88
HMGB3P22-201ENST00000442010 FHAD1B1AJZ9 1412 aa33.05■■■□□ 2.88
HMGB3P22-201ENST00000442010 NUP160Q12769 1436 aa33■■■□□ 2.87
HMGB3P22-201ENST00000442010 CEP170Q5SW79 1584 aa32.99■■■□□ 2.87
HMGB3P22-201ENST00000442010 SHROOM2Q13796 1616 aa32.84■■■□□ 2.85
HMGB3P22-201ENST00000442010 KIF27Q86VH2 1401 aa32.84■■■□□ 2.85
HMGB3P22-201ENST00000442010 IGF1RP08069 1367 aa32.81■■■□□ 2.84
HMGB3P22-201ENST00000442010 ERCC6L2Q5T890 1561 aa32.8■■■□□ 2.84
HMGB3P22-201ENST00000442010 CUL7Q14999 1698 aa32.75■■■□□ 2.83
HMGB3P22-201ENST00000442010 RUSC2Q8N2Y8 1516 aa32.7■■■□□ 2.83
HMGB3P22-201ENST00000442010 JPH4Q96JJ6 628 aa32.6■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms